Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1019583	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1723069	0.83[EUR][1000 genomes]
rs1834143	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1991084	0.81[ASN][1000 genomes]
rs2113428	0.82[ASN][1000 genomes]
rs270893	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs270894	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs270895	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs270896	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs270897	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs270898	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs270899	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs270900	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs270901	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs270902	0.82[EUR][1000 genomes]
rs270904	0.81[EUR][1000 genomes]
rs3778797	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3778798	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3778799	0.83[ASN][1000 genomes]
rs3800624	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3800626	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4728420	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6971978	0.83[ASN][1000 genomes]
rs6976725	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7457119	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7806658	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022793	chr7:137187383-137619359	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv464731	chr7:137356651-137404781	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
3	nsv608466	chr7:137356651-137404781	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137368000-137372400	Weak transcription	HMEC	breast
2	chr7:137369600-137372400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr7:137369600-137372800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr7:137369800-137372000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr7:137369800-137372000	Enhancers	Muscle Satellite Cultured Cells	--
6	chr7:137369800-137374800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr7:137370000-137374000	Enhancers	Osteobl	bone
8	chr7:137370200-137373600	Enhancers	HSMMtube	muscle
9	chr7:137370400-137380600	Weak transcription	Brain Angular Gyrus	brain
10	chr7:137370600-137374000	Enhancers	Aorta	Aorta
11	chr7:137370800-137372400	Weak transcription	NHDF-Ad	bronchial
12	chr7:137370800-137373400	Enhancers	NH-A	brain
13	chr7:137370800-137374800	Weak transcription	Brain Germinal Matrix	brain
14	chr7:137370800-137384600	Weak transcription	Fetal Brain Female	brain
15	chr7:137371600-137373400	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr7:137371800-137372400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr7:137371800-137372800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr7:137371800-137372800	Flanking Active TSS	HSMM	muscle

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