Variant report

Variant	rs3778797
Chromosome Location	chr7:137371441-137371442
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1019583	0.95[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10234581	0.82[CHB][hapmap]
rs12056089	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs12707367	0.86[CHB][hapmap];0.83[JPT][hapmap]
rs1424370	0.85[CHB][hapmap];0.82[JPT][hapmap]
rs1424371	0.84[CHB][hapmap]
rs1723069	0.82[EUR][1000 genomes]
rs1834143	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1991084	0.91[CHB][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs2113428	0.90[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs270893	0.96[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs270894	0.96[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs270895	0.87[CEU][hapmap];0.85[CHB][hapmap];0.89[EUR][1000 genomes]
rs270896	0.95[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs270897	0.91[EUR][1000 genomes]
rs270898	0.87[CEU][hapmap];0.81[JPT][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs270899	0.83[CEU][hapmap];0.82[JPT][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs270900	0.83[CEU][hapmap];0.82[EUR][1000 genomes]
rs270901	0.83[CEU][hapmap];0.82[JPT][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs270902	0.90[CEU][hapmap];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs270904	0.83[CEU][hapmap];0.82[EUR][1000 genomes]
rs3778798	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3778799	0.83[ASN][1000 genomes]
rs3800624	0.95[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3800626	0.95[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3800636	0.82[JPT][hapmap]
rs3800637	0.91[CHB][hapmap];0.81[JPT][hapmap]
rs3800644	0.81[JPT][hapmap]
rs4728420	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4732263	0.86[CHB][hapmap];0.83[JPT][hapmap]
rs4732264	0.85[CHB][hapmap]
rs6944527	0.81[JPT][hapmap]
rs6948537	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6957797	0.81[JPT][hapmap]
rs6971978	0.91[CHB][hapmap];0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs6976725	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7457119	0.95[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7806658	0.91[CHB][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs7806810	0.85[CHB][hapmap];0.82[JPT][hapmap]
rs9784934	0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022793	chr7:137187383-137619359	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv464731	chr7:137356651-137404781	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
3	nsv608466	chr7:137356651-137404781	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137366800-137371800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr7:137368000-137372400	Weak transcription	HMEC	breast
3	chr7:137369600-137371800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr7:137369600-137372400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr7:137369600-137372800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr7:137369800-137371800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr7:137369800-137372000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr7:137369800-137372000	Enhancers	Muscle Satellite Cultured Cells	--
9	chr7:137369800-137374800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr7:137370000-137371600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr7:137370000-137374000	Enhancers	Osteobl	bone
12	chr7:137370200-137373600	Enhancers	HSMMtube	muscle
13	chr7:137370400-137380600	Weak transcription	Brain Angular Gyrus	brain
14	chr7:137370600-137374000	Enhancers	Aorta	Aorta
15	chr7:137370800-137372400	Weak transcription	NHDF-Ad	bronchial
16	chr7:137370800-137373400	Enhancers	NH-A	brain
17	chr7:137370800-137374800	Weak transcription	Brain Germinal Matrix	brain
18	chr7:137370800-137384600	Weak transcription	Fetal Brain Female	brain
19	chr7:137371000-137371600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr7:137371200-137371800	Enhancers	HSMM	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links