Variant report

Variant rs1836000
Chromosome Location chr19:52495114-52495115
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:40 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:52490200-52496000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
2 chr19:52490400-52509800 ZNF genes & repeats Monocytes-CD14+_RO01746 blood
3 chr19:52490600-52495400 Weak transcription iPS-15b Cell Line embryonic stem cell
4 chr19:52490600-52495400 Weak transcription Brain Germinal Matrix brain
5 chr19:52490600-52495600 Weak transcription Right Ventricle heart
6 chr19:52490600-52495800 Weak transcription Fetal Heart heart
7 chr19:52490600-52496000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
8 chr19:52490600-52496000 Weak transcription Fetal Kidney kidney
9 chr19:52490600-52496000 Weak transcription Placenta Amnion Placenta Amnion
10 chr19:52490600-52496200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
11 chr19:52491000-52507600 ZNF genes & repeats Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
12 chr19:52491800-52507600 ZNF genes & repeats Adipose Nuclei Adipose
13 chr19:52491800-52508000 ZNF genes & repeats Duodenum Smooth Muscle Duodenum
14 chr19:52492000-52508000 ZNF genes & repeats Duodenum Mucosa Duodenum
15 chr19:52493600-52507800 ZNF genes & repeats hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
16 chr19:52493600-52507800 ZNF genes & repeats Breast Myoepithelial Primary Cells Breast
17 chr19:52493800-52508200 ZNF genes & repeats Fetal Brain Female brain
18 chr19:52494000-52496000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
19 chr19:52494000-52507600 Strong transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
20 chr19:52494200-52495600 Weak transcription Placenta Placenta
21 chr19:52494200-52503600 ZNF genes & repeats Skeletal Muscle Female skeletal muscle
22 chr19:52494200-52504600 ZNF genes & repeats HUES64 Cell Line embryonic stem cell
23 chr19:52494200-52505800 ZNF genes & repeats Brain Hippocampus Middle brain
24 chr19:52494200-52508800 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
25 chr19:52494400-52496000 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
26 chr19:52494400-52496000 Weak transcription Left Ventricle heart
27 chr19:52494400-52496400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
28 chr19:52494400-52496400 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
29 chr19:52494400-52496600 Weak transcription Fetal Stomach stomach
30 chr19:52494400-52504000 ZNF genes & repeats Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
31 chr19:52494600-52495400 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
32 chr19:52494600-52495400 Weak transcription Cortex derived primary cultured neurospheres brain
33 chr19:52494600-52495600 Weak transcription Brain Cingulate Gyrus brain
34 chr19:52494600-52495600 Weak transcription Brain Inferior Temporal Lobe brain
35 chr19:52494600-52495800 Weak transcription Fetal Muscle Trunk muscle
36 chr19:52494600-52496000 Weak transcription Ovary ovary
37 chr19:52494600-52496000 Weak transcription Skeletal Muscle Male skeletal muscle
38 chr19:52494600-52503600 ZNF genes & repeats Dnd41 blood
39 chr19:52494800-52495600 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
40 chr19:52494800-52495600 Weak transcription Brain Anterior Caudate brain

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