Variant report

Variant	rs1839156
Chromosome Location	chr2:33887560-33887561
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10188943	0.81[ASN][1000 genomes]
rs11124329	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1839154	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2122020	0.84[ASN][1000 genomes]
rs2367816	0.81[ASN][1000 genomes]
rs55831235	0.86[ASN][1000 genomes]
rs55850044	0.89[ASN][1000 genomes]
rs6543733	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6543735	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6712178	0.82[ASN][1000 genomes]
rs6715333	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6737461	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6750267	0.89[ASN][1000 genomes]
rs7561863	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3350238	chr2:33849408-33979026	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv963221	chr2:33877828-33892244	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS	n/a	n/a	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1839156	FAM98A	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:33880600-33895800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr2:33880800-33888600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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