Variant report
| Variant | rs2367816 |
|---|---|
| Chromosome Location | chr2:33873296-33873297 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr2:33869867..33872136-chr2:33872580..33874510,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs10178622 | 0.81[ASN][1000 genomes] |
| rs10188943 | 0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11124329 | 0.91[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs11684779 | 0.84[ASN][1000 genomes] |
| rs11688800 | 0.81[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs1448558 | 0.84[ASN][1000 genomes] |
| rs1839154 | 0.92[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs1839156 | 0.81[ASN][1000 genomes] |
| rs1839157 | 0.88[EUR][1000 genomes] |
| rs2122020 | 0.83[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs55831235 | 0.85[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs55850044 | 0.85[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs6543733 | 0.90[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs6543735 | 0.89[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs6712178 | 0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs6715333 | 0.89[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs6737461 | 0.92[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs6750267 | 0.87[ASN][1000 genomes] |
| rs7561863 | 0.94[EUR][1000 genomes];0.95[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3350238 | chr2:33849408-33979026 | Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs2367816 | FAM98A | Cis_1M | lymphoblastoid | RTeQTL |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:33869800-33878000 | Weak transcription | ES-UCSF4 Cell Line | embryonic stem cell |
