Variant report
| Variant | rs1839157 |
|---|---|
| Chromosome Location | chr2:33869228-33869229 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr2:33862671..33864955-chr2:33868719..33871401,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:31)
| rs_ID | r2[population] |
|---|---|
| rs10166099 | 0.84[ASN][1000 genomes] |
| rs10188943 | 0.84[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs1078626 | 0.84[ASN][1000 genomes] |
| rs11124329 | 0.89[EUR][1000 genomes] |
| rs11677823 | 0.83[ASN][1000 genomes] |
| rs11892899 | 0.84[ASN][1000 genomes] |
| rs12468142 | 0.84[ASN][1000 genomes] |
| rs13391382 | 0.83[ASN][1000 genomes] |
| rs1448558 | 0.92[ASN][1000 genomes] |
| rs1839154 | 0.80[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs2122020 | 0.85[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs2367816 | 0.88[EUR][1000 genomes] |
| rs2887088 | 0.83[ASN][1000 genomes] |
| rs4499406 | 0.83[ASN][1000 genomes] |
| rs4670228 | 0.83[ASN][1000 genomes] |
| rs4670229 | 0.83[ASN][1000 genomes] |
| rs4670815 | 0.84[ASN][1000 genomes] |
| rs4670817 | 0.84[ASN][1000 genomes] |
| rs55831235 | 0.82[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs55850044 | 0.83[EUR][1000 genomes] |
| rs6543728 | 0.82[ASN][1000 genomes] |
| rs6543733 | 0.88[EUR][1000 genomes] |
| rs6543735 | 0.86[EUR][1000 genomes] |
| rs6707694 | 0.81[ASN][1000 genomes] |
| rs6712178 | 0.82[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs6715333 | 0.80[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs6722975 | 0.84[ASN][1000 genomes] |
| rs6737461 | 0.84[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs7561863 | 0.80[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs7572639 | 0.85[ASN][1000 genomes] |
| rs7604454 | 0.84[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3350238 | chr2:33849408-33979026 | Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs1839157 | FAM98A | Cis_1M | lymphoblastoid | RTeQTL |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:33868600-33870800 | Weak transcription | HUES48 Cell Line | embryonic stem cell |
