Variant report

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10166099	0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10173763	0.95[CHB][hapmap];0.81[JPT][hapmap]
rs10186755	0.81[ASN][1000 genomes]
rs10188943	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs10197783	0.95[CHB][hapmap];0.81[JPT][hapmap]
rs1078626	0.92[ASN][1000 genomes]
rs11677823	0.92[ASN][1000 genomes]
rs11687252	0.80[ASN][1000 genomes]
rs11892899	0.92[ASN][1000 genomes]
rs12468142	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13391382	0.92[ASN][1000 genomes]
rs1448558	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1839154	0.80[AMR][1000 genomes]
rs1839157	0.82[ASN][1000 genomes]
rs2367811	0.87[CHB][hapmap]
rs2887088	0.92[ASN][1000 genomes]
rs4499406	0.91[ASN][1000 genomes]
rs4670228	0.92[ASN][1000 genomes]
rs4670229	0.92[ASN][1000 genomes]
rs4670815	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4670817	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6707694	0.88[ASN][1000 genomes]
rs6722975	0.92[ASN][1000 genomes]
rs6737461	0.80[AMR][1000 genomes]
rs6757234	0.91[CHB][hapmap]
rs723241	0.86[CHB][hapmap]
rs7561863	0.80[AMR][1000 genomes]
rs7572639	0.93[ASN][1000 genomes]
rs7604454	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3350238	chr2:33849408-33979026	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv963220	chr2:33860909-33862757	Weak transcription Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs6543728	MYADML	cis	parietal	SCAN
rs6543728	FAM98A	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:33859800-33862000	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr2:33860000-33862200	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr2:33860400-33862800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr2:33860400-33862800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr2:33860600-33861600	Enhancers	Fetal Heart	heart
6	chr2:33860600-33862200	Enhancers	Primary hematopoietic stem cells	blood
7	chr2:33860600-33863200	Enhancers	Primary hematopoietic stem cells short term culture	blood

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