Variant report

Variant	rs6757234
Chromosome Location	chr2:33829341-33829342
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:33822942..33826673-chr2:33827306..33831719,4	MCF-7	breast:
2	chr2:33829331..33831606-chr2:33844962..33847782,2	MCF-7	breast:
3	chr2:33822916..33825933-chr2:33827272..33830104,3	K562	blood:

Variant related genes	Relation type
ENSG00000119812	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10166099	0.88[CHB][hapmap];0.82[JPT][hapmap]
rs10168254	0.91[JPT][hapmap]
rs10173763	0.95[CHB][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs10186755	0.92[ASN][1000 genomes]
rs10197783	0.96[CHB][hapmap];0.96[JPT][hapmap];0.96[ASN][1000 genomes]
rs11066	0.90[JPT][hapmap]
rs11677823	0.81[ASN][1000 genomes]
rs11687252	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1375199	0.91[JPT][hapmap]
rs1448559	0.90[JPT][hapmap]
rs2367811	0.86[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs2887088	0.81[ASN][1000 genomes]
rs3023	0.90[JPT][hapmap]
rs4494721	0.92[ASN][1000 genomes]
rs4670228	0.81[ASN][1000 genomes]
rs4670229	0.81[ASN][1000 genomes]
rs6543722	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6543728	0.91[CHB][hapmap]
rs6707566	0.94[ASN][1000 genomes]
rs6707694	0.81[ASN][1000 genomes]
rs6708570	0.90[JPT][hapmap]
rs6718639	0.91[JPT][hapmap]
rs6740336	0.91[JPT][hapmap]
rs6748630	0.90[ASN][1000 genomes]
rs723241	1.00[JPT][hapmap]
rs723242	0.89[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6757234	FAM98A	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:33825000-33829800	Weak transcription	Left Ventricle	heart
2	chr2:33825000-33830200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr2:33825000-33830200	Weak transcription	Esophagus	oesophagus
4	chr2:33825200-33829800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr2:33825200-33829800	Weak transcription	Placenta	Placenta
6	chr2:33825200-33830000	Weak transcription	Fetal Kidney	kidney
7	chr2:33825200-33830200	Weak transcription	Adipose Nuclei	Adipose
8	chr2:33825200-33830200	Weak transcription	NHEK	skin
9	chr2:33825200-33831200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr2:33825200-33832200	Weak transcription	Fetal Heart	heart
11	chr2:33825200-33832200	Weak transcription	Psoas Muscle	Psoas
12	chr2:33825200-33837000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr2:33825200-33846600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr2:33825400-33830200	Weak transcription	Brain Cingulate Gyrus	brain
15	chr2:33825400-33833000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr2:33827000-33830800	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr2:33827000-33830800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr2:33827200-33830600	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr2:33827400-33830000	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr2:33827400-33832200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr2:33828000-33832000	Weak transcription	Ovary	ovary
22	chr2:33828200-33830800	Enhancers	HUES64 Cell Line	embryonic stem cell
23	chr2:33828600-33829600	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr2:33828600-33829800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr2:33828600-33831800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr2:33828800-33830600	Enhancers	ES-I3 Cell Line	embryonic stem cell
27	chr2:33828800-33830800	Enhancers	iPS-18 Cell Line	embryonic stem cell
28	chr2:33829200-33830800	Enhancers	HUES48 Cell Line	embryonic stem cell
29	chr2:33829200-33832200	Enhancers	iPS-20b Cell Line	embryonic stem cell
30	chr2:33829200-33833000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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