Variant report

Variant	rs10197783
Chromosome Location	chr2:33830629-33830630
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:33822942..33826673-chr2:33827306..33831719,4	MCF-7	breast:
2	chr2:33829331..33831606-chr2:33844962..33847782,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000119812	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10166099	0.92[CHB][hapmap];0.87[JPT][hapmap];0.82[ASN][1000 genomes]
rs10168254	0.92[CEU][hapmap];0.87[JPT][hapmap];0.92[EUR][1000 genomes]
rs10173763	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10186755	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1078626	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11066	0.86[JPT][hapmap]
rs11677823	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11687252	0.96[ASN][1000 genomes]
rs11892899	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12468142	0.82[ASN][1000 genomes]
rs13391382	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1375198	0.92[CEU][hapmap];0.89[EUR][1000 genomes]
rs1375199	0.87[JPT][hapmap]
rs1448559	0.95[CEU][hapmap];0.85[JPT][hapmap];0.88[EUR][1000 genomes]
rs2367811	0.91[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs2887088	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3023	0.91[CEU][hapmap];0.86[JPT][hapmap];0.88[EUR][1000 genomes]
rs4494721	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4499406	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4670228	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4670229	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4670815	0.82[ASN][1000 genomes]
rs4670817	0.82[ASN][1000 genomes]
rs6543722	0.96[ASN][1000 genomes]
rs6543728	0.95[CHB][hapmap];0.81[JPT][hapmap]
rs6707566	0.96[ASN][1000 genomes]
rs6707694	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6708570	0.86[JPT][hapmap]
rs6718639	0.86[JPT][hapmap]
rs6722975	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6740336	0.81[CEU][hapmap];0.86[JPT][hapmap]
rs6748630	0.92[ASN][1000 genomes]
rs6757234	0.96[CHB][hapmap];0.96[JPT][hapmap];0.96[ASN][1000 genomes]
rs723241	0.95[JPT][hapmap]
rs723242	0.87[ASN][1000 genomes]
rs7572639	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7604454	0.82[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10197783	FAM98A	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:33825200-33831200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr2:33825200-33832200	Weak transcription	Fetal Heart	heart
3	chr2:33825200-33832200	Weak transcription	Psoas Muscle	Psoas
4	chr2:33825200-33837000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr2:33825200-33846600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr2:33825400-33833000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr2:33827000-33830800	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr2:33827000-33830800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr2:33827400-33832200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr2:33828000-33832000	Weak transcription	Ovary	ovary
11	chr2:33828200-33830800	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr2:33828600-33831800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr2:33828800-33830800	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr2:33829200-33830800	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr2:33829200-33832200	Enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr2:33829200-33833000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr2:33829600-33830800	Enhancers	H1 Cell Line	embryonic stem cell
18	chr2:33829800-33831000	Enhancers	Placenta	Placenta
19	chr2:33830000-33830800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr2:33830000-33831600	Enhancers	Fetal Kidney	kidney
21	chr2:33830200-33830800	Enhancers	Brain Cingulate Gyrus	brain
22	chr2:33830400-33833200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr2:33830400-33833200	Weak transcription	Left Ventricle	heart
24	chr2:33830400-33834800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr2:33830600-33832000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr2:33830600-33832000	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr2:33830600-33832800	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr2:33830600-33832800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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