Variant report

Variant	rs4670815
Chromosome Location	chr2:33852489-33852490
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:33848285..33850159-chr2:33851964..33854579,2	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10166099	0.81[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10173763	0.95[CHB][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs10186755	0.85[ASN][1000 genomes]
rs10188943	0.80[AMR][1000 genomes]
rs10197783	0.91[CHB][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs1078626	0.97[ASN][1000 genomes]
rs11677823	0.97[ASN][1000 genomes]
rs11687252	0.85[ASN][1000 genomes]
rs11892899	0.97[ASN][1000 genomes]
rs12468142	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12468338	1.00[YRI][hapmap]
rs13391382	0.97[ASN][1000 genomes]
rs1448558	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1839157	0.84[ASN][1000 genomes]
rs2367811	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs2887088	0.97[ASN][1000 genomes]
rs4494721	0.85[ASN][1000 genomes]
rs4499406	0.96[ASN][1000 genomes]
rs4670228	0.97[ASN][1000 genomes]
rs4670229	0.97[ASN][1000 genomes]
rs4670817	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6543722	0.84[ASN][1000 genomes]
rs6543728	1.00[ASW][hapmap];0.88[CEU][hapmap];0.91[CHB][hapmap];0.88[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.98[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6707566	0.80[ASN][1000 genomes]
rs6707694	0.92[ASN][1000 genomes]
rs6722975	0.97[ASN][1000 genomes]
rs6737461	0.80[AMR][1000 genomes]
rs6757234	0.87[CHB][hapmap];0.81[JPT][hapmap]
rs723241	0.81[JPT][hapmap]
rs7572639	0.98[ASN][1000 genomes]
rs7604454	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3350238	chr2:33849408-33979026	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4670815	FAM98A	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:33845200-33859400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr2:33845200-33859600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr2:33851400-33853400	Weak transcription	Ovary	ovary

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