Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:33869867..33872136-chr2:33872580..33874510,2	K562	blood:
2	chr2:33862671..33864955-chr2:33868719..33871401,2	K562	blood:

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10166099	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10188943	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1078626	0.91[ASN][1000 genomes]
rs11124329	0.81[AMR][1000 genomes]
rs11677823	0.90[ASN][1000 genomes]
rs11892899	0.91[ASN][1000 genomes]
rs12468142	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13391382	0.89[ASN][1000 genomes]
rs1839154	0.84[AMR][1000 genomes]
rs1839157	0.92[ASN][1000 genomes]
rs2122020	0.82[AMR][1000 genomes]
rs2367816	0.84[ASN][1000 genomes]
rs2887088	0.90[ASN][1000 genomes]
rs4499406	0.90[ASN][1000 genomes]
rs4670228	0.90[ASN][1000 genomes]
rs4670229	0.90[ASN][1000 genomes]
rs4670815	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4670817	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55831235	0.85[AMR][1000 genomes]
rs55850044	0.82[AMR][1000 genomes]
rs6543728	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6543733	0.80[AMR][1000 genomes]
rs6707694	0.85[ASN][1000 genomes]
rs6712178	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6715333	0.84[AMR][1000 genomes]
rs6722975	0.91[ASN][1000 genomes]
rs6737461	0.87[AMR][1000 genomes]
rs7561863	0.84[AMR][1000 genomes]
rs7572639	0.92[ASN][1000 genomes]
rs7604454	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3350238	chr2:33849408-33979026	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1448558	FAM98A	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:33868600-33870800	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr2:33869800-33871000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr2:33869800-33878000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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