Variant report

Variant	rs7604454
Chromosome Location	chr2:33841916-33841917
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10166099	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10173763	0.95[CHB][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs10186755	0.87[ASN][1000 genomes]
rs10197783	0.91[CHB][hapmap];0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs1078626	1.00[ASN][1000 genomes]
rs11677823	0.99[ASN][1000 genomes]
rs11687252	0.85[ASN][1000 genomes]
rs11892899	1.00[ASN][1000 genomes]
rs12468142	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13391382	0.98[ASN][1000 genomes]
rs1448558	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1839157	0.84[ASN][1000 genomes]
rs2367811	0.87[CHB][hapmap];0.85[JPT][hapmap]
rs2887088	0.99[ASN][1000 genomes]
rs4494721	0.86[ASN][1000 genomes]
rs4499406	0.99[ASN][1000 genomes]
rs4670217	0.81[EUR][1000 genomes]
rs4670228	0.99[ASN][1000 genomes]
rs4670229	0.99[ASN][1000 genomes]
rs4670815	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4670817	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6543722	0.84[ASN][1000 genomes]
rs6543728	0.87[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6707566	0.80[ASN][1000 genomes]
rs6707694	0.94[ASN][1000 genomes]
rs6722975	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6757234	0.87[CHB][hapmap];0.86[JPT][hapmap]
rs723241	0.87[CHB][hapmap];0.86[JPT][hapmap];0.80[ASN][1000 genomes]
rs7572639	0.98[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7604454	FAM98A	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:33825200-33846600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr2:33833800-33845200	Weak transcription	Left Ventricle	heart
3	chr2:33834200-33846600	Weak transcription	Psoas Muscle	Psoas
4	chr2:33837200-33843800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr2:33838600-33844000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr2:33840000-33842800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr2:33840200-33843200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
8	chr2:33840800-33842200	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
9	chr2:33840800-33844400	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
10	chr2:33840800-33844800	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
11	chr2:33841200-33843200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr2:33841600-33842400	Enhancers	GM12878-XiMat	blood
13	chr2:33841800-33845000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell

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