Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:33823443..33826142-chr2:33837903..33840812,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000119812	Chromatin interaction

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10166099	0.86[ASN][1000 genomes]
rs10168254	0.82[EUR][1000 genomes]
rs10173763	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10197783	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1078626	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11677823	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11687252	0.98[ASN][1000 genomes]
rs11892899	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12468142	0.87[ASN][1000 genomes]
rs13391382	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2367811	0.84[ASN][1000 genomes]
rs2887088	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4494721	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4499406	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4670228	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4670229	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4670815	0.85[ASN][1000 genomes]
rs4670817	0.85[ASN][1000 genomes]
rs6543722	0.97[ASN][1000 genomes]
rs6543728	0.81[ASN][1000 genomes]
rs6707566	0.93[ASN][1000 genomes]
rs6707694	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6722975	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6748630	0.88[ASN][1000 genomes]
rs6757234	0.92[ASN][1000 genomes]
rs723242	0.84[ASN][1000 genomes]
rs7572639	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7604454	0.87[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10186755	FAM98A	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:33825200-33846600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr2:33833800-33845200	Weak transcription	Left Ventricle	heart
3	chr2:33834200-33846600	Weak transcription	Psoas Muscle	Psoas
4	chr2:33837200-33843800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr2:33837600-33840800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr2:33838000-33840200	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr2:33838600-33844000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr2:33839400-33840000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr2:33839800-33840800	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr2:33839800-33840800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr2:33839800-33840800	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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