Variant report

Variant	rs6707694
Chromosome Location	chr2:33831198-33831199
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:33830666..33833557-chr2:33837571..33839781,2	K562	blood:
2	chr2:33822942..33826673-chr2:33827306..33831719,4	MCF-7	breast:
3	chr2:33829331..33831606-chr2:33844962..33847782,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000119812	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10166099	0.93[ASN][1000 genomes]
rs10173763	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10186755	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10197783	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1078626	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11066	0.83[EUR][1000 genomes]
rs11677823	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11687252	0.81[ASN][1000 genomes]
rs11892899	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12468142	0.94[ASN][1000 genomes]
rs13391382	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1448558	0.85[ASN][1000 genomes]
rs1839157	0.81[ASN][1000 genomes]
rs2887088	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4494721	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4499406	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4670228	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4670229	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4670815	0.92[ASN][1000 genomes]
rs4670817	0.92[ASN][1000 genomes]
rs6543722	0.82[ASN][1000 genomes]
rs6543728	0.88[ASN][1000 genomes]
rs6707566	0.86[ASN][1000 genomes]
rs6708570	0.84[EUR][1000 genomes]
rs6722975	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6757234	0.81[ASN][1000 genomes]
rs723241	0.81[ASN][1000 genomes]
rs7572639	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7604454	0.94[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6707694	FAM98A	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:33825200-33831200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr2:33825200-33832200	Weak transcription	Fetal Heart	heart
3	chr2:33825200-33832200	Weak transcription	Psoas Muscle	Psoas
4	chr2:33825200-33837000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr2:33825200-33846600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr2:33825400-33833000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr2:33827400-33832200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr2:33828000-33832000	Weak transcription	Ovary	ovary
9	chr2:33828600-33831800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr2:33829200-33832200	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr2:33829200-33833000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr2:33830000-33831600	Enhancers	Fetal Kidney	kidney
13	chr2:33830400-33833200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr2:33830400-33833200	Weak transcription	Left Ventricle	heart
15	chr2:33830400-33834800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr2:33830600-33832000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr2:33830600-33832000	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr2:33830600-33832800	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr2:33830600-33832800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr2:33830800-33831600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr2:33830800-33832000	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr2:33830800-33832000	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr2:33830800-33832000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr2:33830800-33832000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr2:33830800-33832200	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr2:33830800-33832600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr2:33830800-33832600	Weak transcription	Brain Cingulate Gyrus	brain
28	chr2:33831000-33832200	Weak transcription	Placenta	Placenta

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