Variant report

Variant	rs723241
Chromosome Location	chr2:33827134-33827135
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RASGRP3-10	chr2:33827108-33827353	NONHSAT070024

Extended variants
information (count: 32 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10166099	0.87[CHB][hapmap];0.82[JPT][hapmap]
rs10168254	0.91[JPT][hapmap]
rs10173763	0.82[CHB][hapmap];0.95[JPT][hapmap]
rs10197783	0.95[JPT][hapmap]
rs1078626	0.80[ASN][1000 genomes]
rs11066	0.83[CEU][hapmap];0.90[JPT][hapmap]
rs11677823	0.80[ASN][1000 genomes]
rs11892899	0.80[ASN][1000 genomes]
rs12468142	0.80[ASN][1000 genomes]
rs12468338	1.00[YRI][hapmap]
rs1375199	1.00[CEU][hapmap];0.83[CHB][hapmap];0.91[JPT][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1448559	0.90[JPT][hapmap]
rs17013131	1.00[YRI][hapmap]
rs17013132	1.00[YRI][hapmap]
rs17013153	1.00[YRI][hapmap]
rs17013160	1.00[YRI][hapmap]
rs2367811	0.91[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2887088	0.80[ASN][1000 genomes]
rs3023	0.90[JPT][hapmap]
rs4499406	0.80[ASN][1000 genomes]
rs4670217	0.80[ASN][1000 genomes]
rs4670228	0.80[ASN][1000 genomes]
rs4670229	0.80[ASN][1000 genomes]
rs6543728	0.86[CHB][hapmap]
rs6707694	0.81[ASN][1000 genomes]
rs6708570	0.83[CEU][hapmap];0.82[CHB][hapmap];0.90[JPT][hapmap]
rs6718639	0.90[JPT][hapmap]
rs6722975	0.80[ASN][1000 genomes]
rs6740336	0.91[JPT][hapmap]
rs6757234	1.00[JPT][hapmap]
rs723242	0.85[ASN][1000 genomes]
rs7604454	0.80[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs723241	FAM98A	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:33825000-33828400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:33825000-33829800	Weak transcription	Left Ventricle	heart
3	chr2:33825000-33830200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr2:33825000-33830200	Weak transcription	Esophagus	oesophagus
5	chr2:33825200-33827200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr2:33825200-33827200	Weak transcription	Thymus	Thymus
7	chr2:33825200-33827200	Weak transcription	Osteobl	bone
8	chr2:33825200-33829800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr2:33825200-33829800	Weak transcription	Placenta	Placenta
10	chr2:33825200-33830000	Weak transcription	Fetal Kidney	kidney
11	chr2:33825200-33830200	Weak transcription	Adipose Nuclei	Adipose
12	chr2:33825200-33830200	Weak transcription	NHEK	skin
13	chr2:33825200-33831200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr2:33825200-33832200	Weak transcription	Fetal Heart	heart
15	chr2:33825200-33832200	Weak transcription	Psoas Muscle	Psoas
16	chr2:33825200-33837000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr2:33825200-33846600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr2:33825400-33827200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr2:33825400-33827200	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr2:33825400-33827200	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr2:33825400-33827200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr2:33825400-33827200	Weak transcription	NH-A	brain
23	chr2:33825400-33827400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr2:33825400-33830200	Weak transcription	Brain Cingulate Gyrus	brain
25	chr2:33825400-33833000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
26	chr2:33826000-33827200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
27	chr2:33826600-33829200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr2:33826800-33827200	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr2:33826800-33828400	Enhancers	HUES48 Cell Line	embryonic stem cell
30	chr2:33827000-33827200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr2:33827000-33827200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
32	chr2:33827000-33827200	Enhancers	Pancreas	Pancrea
33	chr2:33827000-33827400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
34	chr2:33827000-33827600	Enhancers	HSMMtube	muscle
35	chr2:33827000-33827800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr2:33827000-33828000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr2:33827000-33828000	Enhancers	Ovary	ovary
38	chr2:33827000-33828000	Enhancers	HSMM	muscle
39	chr2:33827000-33828600	Enhancers	H1 Cell Line	embryonic stem cell
40	chr2:33827000-33830800	Enhancers	iPS-15b Cell Line	embryonic stem cell
41	chr2:33827000-33830800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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