Variant report

Variant	rs2367811
Chromosome Location	chr2:33827428-33827429
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:33822942..33826673-chr2:33827306..33831719,4	MCF-7	breast:
2	chr2:33822916..33825933-chr2:33827272..33830104,3	K562	blood:

Variant related genes	Relation type
ENSG00000119812	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10166099	0.87[CHB][hapmap];0.81[JPT][hapmap]
rs10168254	0.88[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs10173763	0.91[CHB][hapmap];0.81[CHD][hapmap];0.89[GIH][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs10186755	0.84[ASN][1000 genomes]
rs10197783	0.91[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs11066	0.90[JPT][hapmap]
rs11687252	0.83[ASN][1000 genomes]
rs1375198	0.88[CEU][hapmap];0.81[ASN][1000 genomes]
rs1375199	0.90[JPT][hapmap]
rs1448559	0.89[CEU][hapmap];0.81[CHB][hapmap];0.89[JPT][hapmap];0.80[ASN][1000 genomes]
rs3023	0.88[CEU][hapmap];0.82[CHB][hapmap];0.91[CHD][hapmap];0.87[GIH][hapmap];0.90[JPT][hapmap];0.80[ASN][1000 genomes]
rs4494721	0.84[ASN][1000 genomes]
rs6543722	0.84[ASN][1000 genomes]
rs6543728	0.87[CHB][hapmap]
rs6707566	0.84[ASN][1000 genomes]
rs6708570	0.90[JPT][hapmap]
rs6718639	0.95[CEU][hapmap];0.90[JPT][hapmap];0.83[EUR][1000 genomes]
rs6740336	1.00[CEU][hapmap];0.90[JPT][hapmap];0.80[ASN][1000 genomes]
rs6757234	0.86[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs723241	0.91[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs723242	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2367811	FAM98A	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:33825000-33828400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:33825000-33829800	Weak transcription	Left Ventricle	heart
3	chr2:33825000-33830200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr2:33825000-33830200	Weak transcription	Esophagus	oesophagus
5	chr2:33825200-33829800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr2:33825200-33829800	Weak transcription	Placenta	Placenta
7	chr2:33825200-33830000	Weak transcription	Fetal Kidney	kidney
8	chr2:33825200-33830200	Weak transcription	Adipose Nuclei	Adipose
9	chr2:33825200-33830200	Weak transcription	NHEK	skin
10	chr2:33825200-33831200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr2:33825200-33832200	Weak transcription	Fetal Heart	heart
12	chr2:33825200-33832200	Weak transcription	Psoas Muscle	Psoas
13	chr2:33825200-33837000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr2:33825200-33846600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr2:33825400-33830200	Weak transcription	Brain Cingulate Gyrus	brain
16	chr2:33825400-33833000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
17	chr2:33826600-33829200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr2:33826800-33828400	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr2:33827000-33827600	Enhancers	HSMMtube	muscle
20	chr2:33827000-33827800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr2:33827000-33828000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr2:33827000-33828000	Enhancers	Ovary	ovary
23	chr2:33827000-33828000	Enhancers	HSMM	muscle
24	chr2:33827000-33828600	Enhancers	H1 Cell Line	embryonic stem cell
25	chr2:33827000-33830800	Enhancers	iPS-15b Cell Line	embryonic stem cell
26	chr2:33827000-33830800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
27	chr2:33827200-33827600	Enhancers	iPS-20b Cell Line	embryonic stem cell
28	chr2:33827200-33827600	Enhancers	NH-A	brain
29	chr2:33827200-33827800	Enhancers	HUES64 Cell Line	embryonic stem cell
30	chr2:33827200-33827800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr2:33827200-33828000	Enhancers	Osteobl	bone
32	chr2:33827200-33828400	Enhancers	iPS-18 Cell Line	embryonic stem cell
33	chr2:33827200-33830600	Enhancers	HUES6 Cell Line	embryonic stem cell
34	chr2:33827400-33828400	Enhancers	ES-I3 Cell Line	embryonic stem cell
35	chr2:33827400-33830000	Weak transcription	H9 Cell Line	embryonic stem cell
36	chr2:33827400-33832200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links