Variant report

Variant	rs11677823
Chromosome Location	chr2:33835782-33835783
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10166099	0.98[ASN][1000 genomes]
rs10173763	0.84[ASN][1000 genomes]
rs10186755	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10197783	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1078626	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11687252	0.86[ASN][1000 genomes]
rs11892899	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12468142	0.99[ASN][1000 genomes]
rs13391382	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1448558	0.90[ASN][1000 genomes]
rs1839157	0.83[ASN][1000 genomes]
rs2887088	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4494721	0.87[AFR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4499406	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4670228	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4670229	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4670815	0.97[ASN][1000 genomes]
rs4670817	0.97[ASN][1000 genomes]
rs6543722	0.86[ASN][1000 genomes]
rs6543728	0.92[ASN][1000 genomes]
rs6707566	0.82[ASN][1000 genomes]
rs6707694	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6722975	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6757234	0.81[ASN][1000 genomes]
rs723241	0.80[ASN][1000 genomes]
rs7572639	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7604454	0.99[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11677823	FAM98A	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:33825200-33837000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr2:33825200-33846600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr2:33833800-33836800	Weak transcription	Ovary	ovary
4	chr2:33833800-33845200	Weak transcription	Left Ventricle	heart
5	chr2:33834000-33837400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
6	chr2:33834200-33846600	Weak transcription	Psoas Muscle	Psoas
7	chr2:33834400-33836800	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
8	chr2:33834600-33835800	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
9	chr2:33834600-33837000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
10	chr2:33834800-33836000	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
11	chr2:33834800-33837000	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
12	chr2:33834800-33837400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
13	chr2:33835000-33837200	ZNF genes & repeats	Placenta	Placenta
14	chr2:33835200-33835800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr2:33835400-33837200	ZNF genes & repeats	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr2:33835600-33836200	ZNF genes & repeats	H9 Cell Line	embryonic stem cell

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