Variant report

Variant	rs1840579
Chromosome Location	chr8:2283059-2283060
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1455644	0.82[EUR][1000 genomes]
rs17079175	0.82[EUR][1000 genomes]
rs34475051	0.82[EUR][1000 genomes]
rs35897515	0.82[EUR][1000 genomes]
rs57709104	0.82[EUR][1000 genomes]
rs60576212	0.82[EUR][1000 genomes]
rs7017086	0.82[EUR][1000 genomes]
rs73552507	0.82[EUR][1000 genomes]
rs73552508	0.82[EUR][1000 genomes]
rs73552511	0.82[EUR][1000 genomes]
rs73552525	0.82[EUR][1000 genomes]
rs7823388	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889712	chr8:1591412-2337777	Weak transcription Active TSS Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:2282600-2283200	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr8:2282600-2283800	Enhancers	Stomach Mucosa	stomach
3	chr8:2282800-2283200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
4	chr8:2283000-2283200	Bivalent Enhancer	Small Intestine	intestine
5	chr8:2283000-2283600	Enhancers	H9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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