Variant report
| Variant | rs60576212 |
|---|---|
| Chromosome Location | chr8:2281755-2281756 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr8:2273693..2275331-chr8:2281704..2283828,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs1455640 | 0.90[EUR][1000 genomes] |
| rs1455641 | 0.90[EUR][1000 genomes] |
| rs1455644 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17074085 | 0.90[EUR][1000 genomes] |
| rs17079175 | 1.00[EUR][1000 genomes] |
| rs17079636 | 0.90[EUR][1000 genomes] |
| rs1840579 | 0.82[EUR][1000 genomes] |
| rs34159309 | 0.82[EUR][1000 genomes] |
| rs34239354 | 0.82[EUR][1000 genomes] |
| rs34350729 | 0.82[EUR][1000 genomes] |
| rs34475051 | 1.00[EUR][1000 genomes] |
| rs34498067 | 0.90[EUR][1000 genomes] |
| rs35897515 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs57709104 | 1.00[EUR][1000 genomes] |
| rs7004810 | 0.90[EUR][1000 genomes] |
| rs7017086 | 1.00[EUR][1000 genomes] |
| rs73552507 | 1.00[EUR][1000 genomes] |
| rs73552508 | 1.00[EUR][1000 genomes] |
| rs73552511 | 1.00[EUR][1000 genomes] |
| rs73552525 | 1.00[EUR][1000 genomes] |
| rs7823388 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv889712 | chr8:1591412-2337777 | Weak transcription Active TSS Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 22 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:2278800-2283000 | Weak transcription | H9 Cell Line | embryonic stem cell |
