Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1455640	0.90[EUR][1000 genomes]
rs1455641	0.90[EUR][1000 genomes]
rs1455644	1.00[EUR][1000 genomes]
rs17074085	0.90[EUR][1000 genomes]
rs17079175	1.00[EUR][1000 genomes]
rs17079636	0.90[EUR][1000 genomes]
rs1840579	0.82[EUR][1000 genomes]
rs34159309	0.82[EUR][1000 genomes]
rs34239354	0.82[EUR][1000 genomes]
rs34350729	0.82[EUR][1000 genomes]
rs34475051	1.00[EUR][1000 genomes]
rs34498067	0.90[EUR][1000 genomes]
rs35897515	1.00[EUR][1000 genomes]
rs57709104	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60576212	1.00[EUR][1000 genomes]
rs7004810	0.90[EUR][1000 genomes]
rs7017086	1.00[EUR][1000 genomes]
rs73552507	1.00[EUR][1000 genomes]
rs73552508	1.00[EUR][1000 genomes]
rs73552511	1.00[EUR][1000 genomes]
rs73552525	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889712	chr8:1591412-2337777	Weak transcription Active TSS Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:2263400-2278200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr8:2275200-2277600	Weak transcription	Gastric	stomach
3	chr8:2275200-2280400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr8:2275600-2278200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr8:2276000-2277400	Weak transcription	Stomach Mucosa	stomach

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