Variant report
| Variant | rs1844853 |
|---|---|
| Chromosome Location | chr8:85272408-85272409 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs13253716 | 0.83[EUR][1000 genomes] |
| rs13253923 | 0.82[EUR][1000 genomes] |
| rs13266356 | 0.82[EUR][1000 genomes] |
| rs13268314 | 0.81[EUR][1000 genomes] |
| rs1491566 | 0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2130985 | 0.82[EUR][1000 genomes] |
| rs28378543 | 0.81[EUR][1000 genomes] |
| rs2895920 | 0.83[EUR][1000 genomes] |
| rs4509323 | 0.82[EUR][1000 genomes] |
| rs4639510 | 0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4740004 | 0.83[EUR][1000 genomes] |
| rs4740009 | 0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs6473537 | 0.86[EUR][1000 genomes] |
| rs67589009 | 0.81[AMR][1000 genomes];0.95[ASN][1000 genomes] |
| rs7000150 | 0.81[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs72679309 | 0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs7825684 | 0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs7825715 | 0.82[EUR][1000 genomes] |
| rs7829286 | 0.82[EUR][1000 genomes] |
| rs7841089 | 0.81[EUR][1000 genomes] |
| rs977859 | 0.82[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv831374 | chr8:85103604-85308976 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 2 | esv1806721 | chr8:85257984-85274061 | Enhancers Flanking Active TSS Weak transcription | Chromatin interactive region | n/a | inside rSNPs | n/a |
| 3 | nsv611658 | chr8:85261157-85272419 | Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | n/a |
| 4 | nsv831375 | chr8:85272352-85463621 | Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:85272200-85273600 | Enhancers | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
