Variant report

Variant	rs7825684
Chromosome Location	chr8:85265997-85265998
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 159 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10102752	0.91[CHB][hapmap];0.88[CHD][hapmap];0.91[JPT][hapmap]
rs10102848	0.95[CHB][hapmap];0.90[JPT][hapmap]
rs12542046	0.82[CEU][hapmap];0.91[CHB][hapmap];0.88[CHD][hapmap];0.91[JPT][hapmap];0.93[TSI][hapmap]
rs12548307	0.91[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs12682650	0.91[CHB][hapmap];0.91[JPT][hapmap]
rs13261650	0.80[TSI][hapmap]
rs13268314	0.90[CHB][hapmap];0.95[JPT][hapmap]
rs1352823	0.91[CHB][hapmap];0.91[JPT][hapmap]
rs1388412	0.91[CHB][hapmap];0.91[JPT][hapmap]
rs1388415	0.91[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs1388416	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs1472101	0.91[CHB][hapmap];0.90[JPT][hapmap]
rs1491556	0.91[CHB][hapmap];0.91[JPT][hapmap]
rs1491565	0.86[JPT][hapmap]
rs1491566	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1586798	0.87[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs1844853	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1907549	0.91[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.95[JPT][hapmap];1.00[TSI][hapmap]
rs2029581	0.91[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.86[JPT][hapmap];0.93[TSI][hapmap]
rs2127220	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs2130985	0.83[CEU][hapmap];0.91[CHB][hapmap];0.91[CHD][hapmap];0.91[JPT][hapmap];0.83[MEX][hapmap];0.86[TSI][hapmap]
rs317942	0.86[JPT][hapmap]
rs4349980	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs4504634	0.91[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.91[MEX][hapmap];0.98[TSI][hapmap]
rs4639510	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4740004	0.83[CEU][hapmap];0.91[CHB][hapmap];0.86[CHD][hapmap];0.91[JPT][hapmap];0.83[MEX][hapmap];0.89[TSI][hapmap]
rs4740009	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60226	0.86[JPT][hapmap]
rs6473536	0.91[CHB][hapmap];0.81[CHD][hapmap];0.91[JPT][hapmap];0.82[TSI][hapmap]
rs6473537	0.82[EUR][1000 genomes]
rs67589009	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7000150	0.87[CEU][hapmap];0.91[CHB][hapmap];0.88[CHD][hapmap];0.91[JPT][hapmap];0.87[MEX][hapmap];0.89[TSI][hapmap];0.82[EUR][1000 genomes]
rs7010963	1.00[CHB][hapmap];0.98[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap]
rs72679309	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7825715	0.83[CEU][hapmap]
rs7829286	0.83[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap]
rs7841089	0.83[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap]
rs977857	0.91[CHB][hapmap];0.91[JPT][hapmap]
rs977858	0.91[CHB][hapmap];0.90[JPT][hapmap]
rs977859	0.83[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:119 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831374	chr8:85103604-85308976	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv1842719	chr8:85198548-85268951	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
3	nsv1028784	chr8:85215670-85268654	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
4	nsv1034144	chr8:85230634-85268654	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
5	nsv1028025	chr8:85239131-85268654	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
6	esv1836296	chr8:85239703-85267546	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
7	nsv1020913	chr8:85240474-85268654	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
8	nsv611647	chr8:85241871-85268622	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
9	nsv611648	chr8:85241871-85268951	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
10	nsv1020493	chr8:85246493-85268654	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
11	esv2764062	chr8:85251665-85270692	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
12	esv1835731	chr8:85252029-85268654	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
13	nsv611649	chr8:85254032-85268622	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
14	esv1839552	chr8:85254468-85268951	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
15	nsv6281	chr8:85256650-85271875	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
16	esv2829898	chr8:85257540-85265997	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
17	nsv611650	chr8:85257540-85265997	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
18	esv1834327	chr8:85257540-85267546	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
19	esv1837828	chr8:85257540-85267546	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
20	esv1838371	chr8:85257540-85267546	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
21	esv1839106	chr8:85257540-85267546	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
22	esv1841987	chr8:85257540-85267546	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
23	esv1835283	chr8:85257540-85268951	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
24	esv1835635	chr8:85257540-85268951	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
25	esv1841881	chr8:85257540-85268951	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
26	esv1842578	chr8:85257540-85268951	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
27	nsv437075	chr8:85257540-85271329	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
28	nsv437076	chr8:85257540-85271644	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
29	nsv1029732	chr8:85257555-85268654	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
30	nsv1026499	chr8:85257555-85270837	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
31	nsv1030318	chr8:85257555-85271329	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
32	nsv1023024	chr8:85257959-85268654	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
33	esv1806721	chr8:85257984-85274061	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
34	esv3358179	chr8:85259847-85270795	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
35	esv3335073	chr8:85260297-85270145	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
36	esv3479550	chr8:85260342-85269415	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
37	nsv8361	chr8:85260488-85269938	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
38	esv3524409	chr8:85260553-85269936	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
39	esv1830177	chr8:85260623-85268003	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
40	esv3479553	chr8:85260839-85269277	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
41	esv3402820	chr8:85260855-85269278	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
42	nsv820872	chr8:85260868-85269503	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
43	nsv824678	chr8:85260868-85269503	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
44	esv3353803	chr8:85260872-85269253	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
45	esv3524407	chr8:85260884-85269206	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
46	esv3479549	chr8:85260889-85269243	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
47	nsv436574	chr8:85260892-85269319	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
48	esv3479548	chr8:85260904-85269199	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
49	esv3524411	chr8:85260905-85269206	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
50	esv3524410	chr8:85260905-85269217	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:85265400-85267200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr8:85265600-85266000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr8:85265600-85266600	Enhancers	NH-A	brain
4	chr8:85265600-85266800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr8:85265600-85266800	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr8:85265600-85267400	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr8:85265600-85267600	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr8:85265600-85267800	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr8:85265600-85268200	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr8:85265800-85266800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr8:85265800-85267000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr8:85265800-85267200	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr8:85265800-85267400	Enhancers	iPS-18 Cell Line	embryonic stem cell

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