Variant report

Variant	rs1907549
Chromosome Location	chr8:85257540-85257541
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10102752	0.95[CHB][hapmap];0.86[CHD][hapmap];0.95[JPT][hapmap]
rs10102848	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs10112823	0.84[CEU][hapmap]
rs12542046	0.91[CEU][hapmap];0.95[CHB][hapmap];0.86[CHD][hapmap];0.95[JPT][hapmap];0.93[TSI][hapmap]
rs12548307	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12682650	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs13253716	0.81[EUR][1000 genomes]
rs13253923	0.85[EUR][1000 genomes]
rs13261650	0.84[CEU][hapmap];0.80[TSI][hapmap]
rs13266356	0.84[EUR][1000 genomes]
rs13268314	0.95[CHB][hapmap];0.95[JPT][hapmap];0.83[EUR][1000 genomes]
rs1352823	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs1388412	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs1388415	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1388416	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1472101	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs1491556	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs1491565	0.88[CEU][hapmap];0.81[JPT][hapmap]
rs1491566	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1586798	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1844853	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2029581	0.90[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.93[MKK][hapmap];0.93[TSI][hapmap]
rs2127220	0.80[CEU][hapmap];0.81[JPT][hapmap]
rs2130985	0.92[CEU][hapmap];0.95[CHB][hapmap];0.88[CHD][hapmap];0.88[GIH][hapmap];0.95[JPT][hapmap];0.86[TSI][hapmap];0.85[EUR][1000 genomes]
rs28378543	0.84[EUR][1000 genomes]
rs2895920	0.85[EUR][1000 genomes]
rs317942	0.80[CEU][hapmap];0.81[JPT][hapmap]
rs4349980	0.91[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap]
rs4504634	0.90[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[MKK][hapmap];0.98[TSI][hapmap]
rs4509323	0.85[EUR][1000 genomes]
rs4639510	1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.83[MKK][hapmap];0.95[TSI][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4740004	0.92[CEU][hapmap];0.95[CHB][hapmap];0.86[CHD][hapmap];0.95[JPT][hapmap];0.89[TSI][hapmap];0.85[EUR][1000 genomes]
rs4740009	0.91[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60226	0.81[JPT][hapmap]
rs6473536	0.95[CHB][hapmap];0.83[CHD][hapmap];0.95[JPT][hapmap];0.82[TSI][hapmap]
rs6473537	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs67589009	0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7000150	0.90[ASW][hapmap];0.96[CEU][hapmap];0.95[CHB][hapmap];0.86[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];0.82[LWK][hapmap];0.89[MKK][hapmap];0.89[TSI][hapmap];0.89[YRI][hapmap];0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7010963	0.95[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap]
rs72679309	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7825684	0.91[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.95[JPT][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7825715	0.92[CEU][hapmap];0.84[EUR][1000 genomes]
rs7829286	0.92[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.84[EUR][1000 genomes]
rs7841089	0.92[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.83[EUR][1000 genomes]
rs7846520	0.82[EUR][1000 genomes]
rs977857	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs977858	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs977859	0.92[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:28 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831374	chr8:85103604-85308976	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv1842719	chr8:85198548-85268951	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
3	nsv1028784	chr8:85215670-85268654	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
4	nsv1034144	chr8:85230634-85268654	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
5	nsv1028025	chr8:85239131-85268654	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
6	esv1836296	chr8:85239703-85267546	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
7	nsv1020913	chr8:85240474-85268654	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
8	nsv611647	chr8:85241871-85268622	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
9	nsv611648	chr8:85241871-85268951	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
10	nsv1020493	chr8:85246493-85268654	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
11	esv2764062	chr8:85251665-85270692	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
12	esv1835731	chr8:85252029-85268654	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
13	nsv611649	chr8:85254032-85268622	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
14	esv1839552	chr8:85254468-85268951	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
15	nsv6281	chr8:85256650-85271875	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
16	esv2829898	chr8:85257540-85265997	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
17	nsv611650	chr8:85257540-85265997	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
18	esv1834327	chr8:85257540-85267546	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
19	esv1837828	chr8:85257540-85267546	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
20	esv1838371	chr8:85257540-85267546	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
21	esv1839106	chr8:85257540-85267546	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
22	esv1841987	chr8:85257540-85267546	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
23	esv1835283	chr8:85257540-85268951	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
24	esv1835635	chr8:85257540-85268951	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
25	esv1841881	chr8:85257540-85268951	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
26	esv1842578	chr8:85257540-85268951	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
27	nsv437075	chr8:85257540-85271329	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
28	nsv437076	chr8:85257540-85271644	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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