Variant report

Variant	rs4504634
Chromosome Location	chr8:85250233-85250234
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:85244937..85247622-chr8:85249588..85252468,2	MCF-7	breast:

Extended variants
information (count: 58 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10102752	0.95[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap];0.83[MEX][hapmap]
rs10102848	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs10112823	0.84[CEU][hapmap];0.88[MEX][hapmap]
rs12542046	0.91[CEU][hapmap];0.95[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap];0.87[MEX][hapmap];0.95[TSI][hapmap]
rs12548307	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap]
rs12682650	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs13253716	0.81[EUR][1000 genomes]
rs13253923	0.85[EUR][1000 genomes]
rs13261650	0.84[CEU][hapmap];0.80[MEX][hapmap];0.82[TSI][hapmap]
rs13266356	0.84[EUR][1000 genomes]
rs13268314	0.89[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.83[EUR][1000 genomes]
rs1352823	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs1388412	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs1388415	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1388416	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1472101	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs1491556	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs1491565	0.87[CEU][hapmap];0.81[JPT][hapmap]
rs1491566	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1586798	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1844853	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1907549	0.90[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[MKK][hapmap];0.98[TSI][hapmap]
rs2029581	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];1.00[LWK][hapmap];0.88[MEX][hapmap];0.98[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap]
rs2127220	0.81[JPT][hapmap]
rs2130985	0.92[CEU][hapmap];0.95[CHB][hapmap];0.91[CHD][hapmap];0.88[GIH][hapmap];0.95[JPT][hapmap];0.92[MEX][hapmap];0.89[TSI][hapmap];0.85[EUR][1000 genomes]
rs28378543	0.84[EUR][1000 genomes]
rs2895920	0.85[EUR][1000 genomes]
rs317942	0.81[JPT][hapmap]
rs4349980	0.91[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.91[MEX][hapmap];0.91[MKK][hapmap];0.98[TSI][hapmap]
rs4509323	0.85[EUR][1000 genomes]
rs4639510	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.84[LWK][hapmap];0.91[MEX][hapmap];0.90[MKK][hapmap];0.98[TSI][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4740004	0.92[CEU][hapmap];0.95[CHB][hapmap];0.86[CHD][hapmap];0.95[JPT][hapmap];0.92[MEX][hapmap];0.91[TSI][hapmap];0.85[EUR][1000 genomes]
rs4740009	0.91[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.91[MEX][hapmap];0.91[MKK][hapmap];0.98[TSI][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60226	0.81[JPT][hapmap];0.82[TSI][hapmap]
rs6473536	0.95[CHB][hapmap];0.81[CHD][hapmap];0.95[JPT][hapmap];0.84[TSI][hapmap]
rs6473537	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs67589009	0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7000150	1.00[ASW][hapmap];0.96[CEU][hapmap];0.95[CHB][hapmap];0.88[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];0.86[LWK][hapmap];0.96[MEX][hapmap];0.89[MKK][hapmap];0.91[TSI][hapmap];0.89[YRI][hapmap];0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7010963	0.95[CHB][hapmap];0.98[CHD][hapmap];0.95[JPT][hapmap]
rs72679309	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7825684	0.91[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.91[MEX][hapmap];0.98[TSI][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7825715	0.92[CEU][hapmap];0.84[EUR][1000 genomes]
rs7829286	0.92[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs7841089	0.92[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.83[EUR][1000 genomes]
rs7846520	0.82[EUR][1000 genomes]
rs977857	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs977858	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs977859	0.92[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831374	chr8:85103604-85308976	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv1842719	chr8:85198548-85268951	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
3	nsv1028784	chr8:85215670-85268654	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
4	nsv1034144	chr8:85230634-85268654	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
5	nsv1028025	chr8:85239131-85268654	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
6	esv1836296	chr8:85239703-85267546	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
7	nsv1020913	chr8:85240474-85268654	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
8	nsv611647	chr8:85241871-85268622	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
9	nsv611648	chr8:85241871-85268951	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
10	nsv1020493	chr8:85246493-85268654	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4504634	RALYL	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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