Variant report

Variant	rs1586798
Chromosome Location	chr8:85252962-85252963
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10102752	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs10102848	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs10112823	0.81[CEU][hapmap]
rs12542046	0.87[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.92[YRI][hapmap]
rs12548307	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12682650	0.96[CHB][hapmap];0.95[JPT][hapmap]
rs13253923	0.83[EUR][1000 genomes]
rs13261650	0.81[CEU][hapmap]
rs13266356	0.83[EUR][1000 genomes]
rs13268314	0.95[CHB][hapmap];0.95[JPT][hapmap];0.82[EUR][1000 genomes]
rs1352823	0.96[CHB][hapmap];0.95[JPT][hapmap]
rs1388412	0.96[CHB][hapmap];0.95[JPT][hapmap]
rs1388415	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1388416	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1472101	0.96[CHB][hapmap];0.95[JPT][hapmap]
rs1491556	0.96[CHB][hapmap];0.95[JPT][hapmap]
rs1491565	0.83[CEU][hapmap];0.82[JPT][hapmap]
rs1491566	0.96[CEU][hapmap];0.96[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1844853	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1907549	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2029581	0.96[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap]
rs2127220	0.82[JPT][hapmap]
rs2130985	0.88[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.83[EUR][1000 genomes]
rs28378543	0.82[EUR][1000 genomes]
rs2895920	0.84[EUR][1000 genomes]
rs317942	0.81[JPT][hapmap]
rs4349980	0.87[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs4504634	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4509323	0.83[EUR][1000 genomes]
rs4639510	0.95[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4740004	0.88[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.84[EUR][1000 genomes]
rs4740009	0.87[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60226	0.81[JPT][hapmap]
rs6473536	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs6473537	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs67589009	0.99[ASN][1000 genomes]
rs7000150	0.92[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7010963	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs72679309	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7825684	0.87[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7825715	0.88[CEU][hapmap];0.83[EUR][1000 genomes]
rs7829286	0.88[CEU][hapmap];0.96[CHB][hapmap];0.95[JPT][hapmap];0.83[EUR][1000 genomes]
rs7841089	0.88[CEU][hapmap];0.96[CHB][hapmap];0.95[JPT][hapmap];0.82[EUR][1000 genomes]
rs7846520	0.80[EUR][1000 genomes]
rs977857	0.96[CHB][hapmap];0.95[JPT][hapmap]
rs977858	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs977859	0.88[CEU][hapmap];0.96[CHB][hapmap];0.95[JPT][hapmap];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831374	chr8:85103604-85308976	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv1842719	chr8:85198548-85268951	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
3	nsv1028784	chr8:85215670-85268654	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
4	nsv1034144	chr8:85230634-85268654	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
5	nsv1028025	chr8:85239131-85268654	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
6	esv1836296	chr8:85239703-85267546	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
7	nsv1020913	chr8:85240474-85268654	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
8	nsv611647	chr8:85241871-85268622	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
9	nsv611648	chr8:85241871-85268951	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
10	nsv1020493	chr8:85246493-85268654	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
11	esv2764062	chr8:85251665-85270692	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
12	esv1835731	chr8:85252029-85268654	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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