Variant report

Variant	rs12548307
Chromosome Location	chr8:85220396-85220397
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10102752	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs10102848	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs10112823	0.84[CEU][hapmap]
rs12542046	0.91[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs12682650	0.96[CHB][hapmap];0.95[JPT][hapmap]
rs13261650	0.84[CEU][hapmap]
rs13268314	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs1352823	0.96[CHB][hapmap];0.95[JPT][hapmap]
rs1388412	0.96[CHB][hapmap];0.95[JPT][hapmap]
rs1388415	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1388416	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1472101	0.96[CHB][hapmap];0.95[JPT][hapmap]
rs1491556	0.96[CHB][hapmap];0.95[JPT][hapmap]
rs1491565	0.84[CEU][hapmap];0.82[JPT][hapmap]
rs1491566	0.96[CEU][hapmap];0.96[CHB][hapmap];0.95[JPT][hapmap];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1586798	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1844853	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1907549	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2029581	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.89[YRI][hapmap]
rs2127220	0.82[JPT][hapmap]
rs2130985	0.92[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs28378543	0.80[ASN][1000 genomes]
rs2895920	0.80[ASN][1000 genomes]
rs317942	0.82[JPT][hapmap]
rs4349980	0.91[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs4504634	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap]
rs4639510	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4740004	0.92[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs4740009	0.91[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60226	0.81[JPT][hapmap]
rs6473536	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs6473537	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs67589009	0.97[ASN][1000 genomes]
rs7000150	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7010963	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs72679309	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7825684	0.91[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs7825715	0.88[CEU][hapmap]
rs7829286	0.88[CEU][hapmap];0.96[CHB][hapmap];0.95[JPT][hapmap];0.85[YRI][hapmap]
rs7841089	0.88[CEU][hapmap];0.96[CHB][hapmap];0.95[JPT][hapmap]
rs977857	0.96[CHB][hapmap];0.95[JPT][hapmap]
rs977858	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs977859	0.88[CEU][hapmap];0.96[CHB][hapmap];0.95[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2753846	chr8:84637092-85239703	Active TSS Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv831374	chr8:85103604-85308976	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv1842719	chr8:85198548-85268951	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
4	nsv1028784	chr8:85215670-85268654	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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