Variant report

Variant	rs4639510
Chromosome Location	chr8:85272419-85272420
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10102752	0.91[CHB][hapmap];0.88[CHD][hapmap];0.90[JPT][hapmap]
rs10102848	0.95[CHB][hapmap];0.90[JPT][hapmap]
rs10112823	0.83[CEU][hapmap]
rs12542046	0.91[CEU][hapmap];0.91[CHB][hapmap];0.88[CHD][hapmap];0.90[JPT][hapmap];0.93[TSI][hapmap]
rs12548307	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs12682650	0.91[CHB][hapmap];0.90[JPT][hapmap]
rs13253716	0.83[EUR][1000 genomes]
rs13253923	0.82[EUR][1000 genomes]
rs13261650	0.83[CEU][hapmap]
rs13266356	0.82[EUR][1000 genomes]
rs13268314	0.88[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.81[EUR][1000 genomes]
rs1352823	0.91[CHB][hapmap];0.90[JPT][hapmap]
rs1388412	0.91[CHB][hapmap];0.90[JPT][hapmap]
rs1388415	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.91[YRI][hapmap]
rs1388416	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs1472101	0.91[CHB][hapmap];0.90[JPT][hapmap]
rs1491556	0.91[CHB][hapmap];0.90[JPT][hapmap]
rs1491565	0.86[CEU][hapmap];0.86[JPT][hapmap]
rs1491566	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1586798	0.95[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs1844853	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1907549	1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.83[MKK][hapmap];0.95[TSI][hapmap]
rs2029581	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.86[JPT][hapmap];0.84[LWK][hapmap];0.88[MKK][hapmap];0.93[TSI][hapmap]
rs2127220	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs2130985	0.91[CEU][hapmap];0.91[CHB][hapmap];0.91[CHD][hapmap];0.85[GIH][hapmap];0.90[JPT][hapmap];0.83[MEX][hapmap];0.86[TSI][hapmap];0.82[EUR][1000 genomes]
rs28378543	0.81[EUR][1000 genomes]
rs2895920	0.83[EUR][1000 genomes]
rs317942	0.86[JPT][hapmap]
rs4349980	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.95[TSI][hapmap]
rs4504634	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.84[LWK][hapmap];0.91[MEX][hapmap];0.90[MKK][hapmap];0.98[TSI][hapmap]
rs4509323	0.82[EUR][1000 genomes]
rs4740004	0.91[CEU][hapmap];0.91[CHB][hapmap];0.86[CHD][hapmap];0.90[JPT][hapmap];0.83[MEX][hapmap];0.88[TSI][hapmap];0.83[EUR][1000 genomes]
rs4740009	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.95[TSI][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60226	0.86[JPT][hapmap]
rs6473536	0.91[CHB][hapmap];0.81[CHD][hapmap];0.90[JPT][hapmap];0.81[TSI][hapmap]
rs6473537	0.86[EUR][1000 genomes]
rs67589009	0.95[ASN][1000 genomes]
rs7000150	0.95[CEU][hapmap];0.91[CHB][hapmap];0.88[CHD][hapmap];0.88[GIH][hapmap];0.90[JPT][hapmap];0.87[MEX][hapmap];0.88[TSI][hapmap];0.86[EUR][1000 genomes]
rs7010963	1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap]
rs72679309	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7825684	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7825715	0.91[CEU][hapmap];0.82[EUR][1000 genomes]
rs7829286	0.91[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];0.82[EUR][1000 genomes]
rs7841089	0.91[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];0.81[EUR][1000 genomes]
rs977857	0.91[CHB][hapmap];0.90[JPT][hapmap]
rs977858	0.91[CHB][hapmap];0.90[JPT][hapmap]
rs977859	0.91[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831374	chr8:85103604-85308976	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv1806721	chr8:85257984-85274061	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
3	nsv611658	chr8:85261157-85272419	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
4	nsv831375	chr8:85272352-85463621	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4639510	RALYL	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:85272200-85273600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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