Variant report
| Variant | rs1850393 |
|---|---|
| Chromosome Location | chr7:109357639-109357640 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs10265383 | 0.81[EUR][1000 genomes] |
| rs10499981 | 0.84[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.82[ASN][1000 genomes] |
| rs12113278 | 0.82[ASN][1000 genomes] |
| rs13230647 | 0.82[ASN][1000 genomes] |
| rs1581524 | 0.80[EUR][1000 genomes] |
| rs2090428 | 0.81[EUR][1000 genomes] |
| rs2396140 | 0.83[ASN][1000 genomes] |
| rs2396156 | 1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2396157 | 0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs2396158 | 0.81[EUR][1000 genomes] |
| rs3915077 | 0.84[ASN][1000 genomes] |
| rs3915078 | 0.84[ASN][1000 genomes] |
| rs4314580 | 0.82[AFR][1000 genomes];0.96[ASN][1000 genomes] |
| rs4480050 | 0.96[ASN][1000 genomes] |
| rs4727729 | 0.81[EUR][1000 genomes] |
| rs4730398 | 0.85[ASN][1000 genomes] |
| rs62471683 | 0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs62478873 | 0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs67260671 | 0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs67781585 | 0.84[ASN][1000 genomes] |
| rs6956968 | 0.86[ASN][1000 genomes] |
| rs6972503 | 0.96[ASN][1000 genomes] |
| rs6975572 | 0.81[EUR][1000 genomes] |
| rs9648950 | 0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv608079 | chr7:109098364-109862289 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv1015383 | chr7:109315812-109585662 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv532177 | chr7:109319033-110123840 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 4 | nsv888951 | chr7:109345821-109465038 | Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Weak transcription | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 5 | nsv429795 | chr7:109349049-109572049 | Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:109356600-109359200 | Weak transcription | iPS DF 6.9 Cell Line | embryonic stem cell |
| 2 | chr7:109356800-109358200 | ZNF genes & repeats | ES-I3 Cell Line | embryonic stem cell |
