Variant report

Variant	rs4314580
Chromosome Location	chr7:109314640-109314641
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10499981	0.84[CHB][hapmap];0.94[JPT][hapmap];0.87[YRI][hapmap];0.85[ASN][1000 genomes]
rs12113278	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13230647	0.85[ASN][1000 genomes]
rs1850393	0.82[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs2396140	0.84[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs2396156	0.82[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs2396157	0.92[ASN][1000 genomes]
rs3915077	0.82[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs3915078	0.88[ASN][1000 genomes]
rs4480050	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4730398	0.80[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs62471683	0.87[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs62478873	0.81[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs67260671	0.87[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs67781585	0.84[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs6956968	0.80[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs6972503	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9648950	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023379	chr7:109003574-109355234	Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv608079	chr7:109098364-109862289	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1017184	chr7:109240101-109350011	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:109314200-109315000	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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