Variant report
Variant | rs3915077 |
---|---|
Chromosome Location | chr7:109304416-109304417 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr7:109302932..109305473-chr7:109306477..109308301,2 | MCF-7 | breast: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10499981 | 0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs13230647 | 0.95[ASN][1000 genomes] |
rs13247622 | 0.80[ASN][1000 genomes] |
rs1850393 | 0.84[ASN][1000 genomes] |
rs2396140 | 0.98[AFR][1000 genomes];0.91[ASN][1000 genomes] |
rs2396156 | 0.86[ASN][1000 genomes] |
rs2396157 | 0.84[ASN][1000 genomes] |
rs3915078 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs4314580 | 0.82[AFR][1000 genomes];0.88[ASN][1000 genomes] |
rs4480050 | 0.88[ASN][1000 genomes] |
rs4730398 | 0.94[AFR][1000 genomes];0.97[ASN][1000 genomes] |
rs62471683 | 0.86[ASN][1000 genomes] |
rs62478873 | 0.81[ASN][1000 genomes] |
rs67260671 | 0.86[ASN][1000 genomes] |
rs67781585 | 0.98[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs6956968 | 0.94[AFR][1000 genomes];0.81[AMR][1000 genomes];0.96[ASN][1000 genomes] |
rs6972503 | 0.88[ASN][1000 genomes] |
rs9648950 | 0.86[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1023379 | chr7:109003574-109355234 | Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
2 | nsv608079 | chr7:109098364-109862289 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
3 | nsv1017184 | chr7:109240101-109350011 | ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
4 | esv3404915 | chr7:109303316-109304514 | Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | n/a |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr7:109298000-109305400 | Weak transcription | ES-I3 Cell Line | embryonic stem cell |