Variant report

Variant	rs1852177
Chromosome Location	chr7:13599977-13599978
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:13593591..13595646-chr7:13599156..13601092,2	K562	blood:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10238802	0.83[ASN][1000 genomes]
rs10239716	0.83[ASN][1000 genomes]
rs10257130	0.83[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs10277308	0.84[ASN][1000 genomes]
rs10807767	0.86[ASN][1000 genomes]
rs10950471	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12699516	0.83[ASN][1000 genomes]
rs12699517	0.84[ASN][1000 genomes]
rs12699518	0.84[ASN][1000 genomes]
rs12699519	0.84[ASN][1000 genomes]
rs12699520	0.84[ASN][1000 genomes]
rs1357975	0.86[ASN][1000 genomes]
rs1357976	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1357977	0.86[ASN][1000 genomes]
rs1404931	0.83[ASN][1000 genomes]
rs1404933	0.82[ASN][1000 genomes]
rs16877874	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1880631	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1880632	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1880633	0.83[ASN][1000 genomes]
rs2204478	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2222619	0.83[ASN][1000 genomes]
rs28463916	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs28538412	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4721236	0.87[ASN][1000 genomes]
rs6949896	0.91[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs6955341	0.85[ASN][1000 genomes]
rs6962321	0.87[ASN][1000 genomes]
rs6962489	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6973078	0.85[ASN][1000 genomes]
rs6979093	0.84[ASN][1000 genomes]
rs7810495	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9638695	0.84[ASN][1000 genomes]
rs9638696	0.84[ASN][1000 genomes]
rs9638697	0.84[ASN][1000 genomes]
rs9638698	0.82[ASN][1000 genomes]
rs9638699	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9638700	0.84[ASN][1000 genomes]
rs9638701	0.85[ASN][1000 genomes]
rs9638702	0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9639158	0.83[ASN][1000 genomes]
rs9639160	0.84[ASN][1000 genomes]
rs9639161	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023580	chr7:13403531-13624975	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv1815242	chr7:13591076-13633151	Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv887690	chr7:13591197-13702169	Enhancers Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv1026929	chr7:13597929-13716063	Enhancers ZNF genes & repeats Active TSS Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:13599600-13600800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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