Variant report

Variant	rs1880632
Chromosome Location	chr7:13591095-13591096
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10238802	0.96[ASN][1000 genomes]
rs10239716	0.95[ASN][1000 genomes]
rs10257130	0.87[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs10277308	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10807767	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10950471	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12699516	0.96[ASN][1000 genomes]
rs12699517	0.96[ASN][1000 genomes]
rs12699518	0.96[ASN][1000 genomes]
rs12699519	0.96[ASN][1000 genomes]
rs12699520	0.96[ASN][1000 genomes]
rs1357975	0.93[ASN][1000 genomes]
rs1357976	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1357977	0.93[ASN][1000 genomes]
rs1404931	0.96[ASN][1000 genomes]
rs1404933	0.95[ASN][1000 genomes]
rs16877874	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1852177	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1880631	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1880633	0.99[ASN][1000 genomes]
rs2204478	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2222619	0.96[ASN][1000 genomes]
rs28463916	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28538412	0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4721236	0.94[ASN][1000 genomes]
rs6949896	0.95[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6955341	0.97[ASN][1000 genomes]
rs6962321	0.94[ASN][1000 genomes]
rs6962489	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6973078	0.97[ASN][1000 genomes]
rs6979093	0.96[ASN][1000 genomes]
rs7810495	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs9638695	0.96[ASN][1000 genomes]
rs9638696	0.96[ASN][1000 genomes]
rs9638697	0.96[ASN][1000 genomes]
rs9638698	0.95[ASN][1000 genomes]
rs9638699	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs9638700	0.96[ASN][1000 genomes]
rs9638701	0.97[ASN][1000 genomes]
rs9638702	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs9639158	0.96[ASN][1000 genomes]
rs9639160	0.96[ASN][1000 genomes]
rs9639161	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023580	chr7:13403531-13624975	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv606261	chr7:13584982-13591129	Enhancers	n/a	n/a	inside rSNPs	diseases
3	nsv606262	chr7:13584982-13591197	Enhancers	n/a	n/a	inside rSNPs	diseases
4	nsv8050	chr7:13585517-13591877	Enhancers	n/a	n/a	inside rSNPs	diseases
5	esv2764052	chr7:13587412-13591674	Enhancers	n/a	n/a	inside rSNPs	diseases
6	nsv606263	chr7:13590568-13591131	Enhancers	n/a	n/a	inside rSNPs	diseases
7	nsv606264	chr7:13590568-13591180	Enhancers	n/a	n/a	inside rSNPs	diseases
8	nsv606265	chr7:13590568-13591183	Enhancers	n/a	n/a	inside rSNPs	diseases
9	nsv606266	chr7:13590568-13591197	Enhancers	n/a	n/a	inside rSNPs	diseases
10	nsv606267	chr7:13590568-13591302	Enhancers	n/a	n/a	inside rSNPs	diseases
11	nsv606268	chr7:13590568-13591363	Enhancers	n/a	n/a	inside rSNPs	diseases
12	nsv606269	chr7:13590568-13591573	Enhancers	n/a	n/a	inside rSNPs	diseases
13	nsv606270	chr7:13590701-13591131	Enhancers	n/a	n/a	inside rSNPs	diseases
14	nsv606271	chr7:13590701-13591180	Enhancers	n/a	n/a	inside rSNPs	diseases
15	nsv606272	chr7:13590701-13591197	Enhancers	n/a	n/a	inside rSNPs	diseases
16	nsv606273	chr7:13590803-13591183	Enhancers	n/a	n/a	inside rSNPs	diseases
17	esv1815242	chr7:13591076-13633151	Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:13590600-13591400	Enhancers	Psoas Muscle	Psoas
2	chr7:13590800-13591600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr7:13590800-13592000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr7:13591000-13591800	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr7:13591000-13592000	Enhancers	HSMMtube	muscle

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