Variant report

Variant	rs9638701
Chromosome Location	chr7:13579874-13579875
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10238802	0.98[ASN][1000 genomes]
rs10239716	0.80[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs10257130	0.84[ASN][1000 genomes]
rs10277308	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10807767	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10950471	0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12699516	0.92[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs12699517	0.99[ASN][1000 genomes]
rs12699518	0.80[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs12699519	0.99[ASN][1000 genomes]
rs12699520	0.80[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs1357975	0.92[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs1357976	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1357977	0.90[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs1404931	0.98[ASN][1000 genomes]
rs1404933	0.92[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs16877874	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1852177	0.85[ASN][1000 genomes]
rs1880631	0.97[ASN][1000 genomes]
rs1880632	0.97[ASN][1000 genomes]
rs1880633	0.96[ASN][1000 genomes]
rs2204478	0.97[ASN][1000 genomes]
rs2222619	0.84[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs28463916	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28538412	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4721236	0.95[ASN][1000 genomes]
rs6949896	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6955341	0.93[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs6962321	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6962489	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6973078	0.91[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs6979093	0.99[ASN][1000 genomes]
rs7810495	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9638695	0.80[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs9638696	0.80[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs9638697	0.80[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs9638698	0.88[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs9638699	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9638700	0.93[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs9638702	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9639158	0.98[ASN][1000 genomes]
rs9639160	0.80[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs9639161	0.80[AFR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019173	chr7:13063854-13585360	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv538737	chr7:13063854-13585360	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1023580	chr7:13403531-13624975	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:13576000-13580200	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr7:13579600-13580200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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