Variant report

Variant	rs1853138
Chromosome Location	chr6:82259457-82259458
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1341221	1.00[CEU][hapmap]
rs1341223	1.00[CEU][hapmap]
rs1341224	0.80[AFR][1000 genomes]
rs16879669	0.90[AMR][1000 genomes]
rs16893196	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16893200	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16893204	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16893220	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1923151	1.00[CEU][hapmap]
rs2153644	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs2180771	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[MEX][hapmap];0.87[YRI][hapmap];0.90[AMR][1000 genomes]
rs2185587	1.00[CEU][hapmap]
rs6900056	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs6905459	1.00[CEU][hapmap];0.90[AMR][1000 genomes]
rs6907542	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73749183	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs9294236	1.00[CEU][hapmap]
rs9688608	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv604087	chr6:81792413-82326091	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82253200-82264400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:82253400-82260800	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr6:82256400-82260800	Weak transcription	Colon Smooth Muscle	Colon
4	chr6:82259000-82260000	Enhancers	Placenta	Placenta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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