Variant report

Variant	rs1853170
Chromosome Location	chr10:37825476-37825477
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10827786	0.85[ASN][1000 genomes]
rs10827792	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10827797	0.92[ASN][1000 genomes]
rs11011176	0.81[ASN][1000 genomes]
rs11011180	0.81[ASN][1000 genomes]
rs11011186	0.86[ASN][1000 genomes]
rs11011192	0.85[ASN][1000 genomes]
rs11011195	0.83[ASN][1000 genomes]
rs11011201	0.85[ASN][1000 genomes]
rs11011212	0.86[ASN][1000 genomes]
rs11011246	1.00[ASN][1000 genomes]
rs11011247	1.00[ASN][1000 genomes]
rs11011249	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11011250	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11596929	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11597247	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11817898	0.84[ASN][1000 genomes]
rs12354976	0.85[ASN][1000 genomes]
rs12357232	1.00[ASN][1000 genomes]
rs12765075	0.99[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12772435	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12776379	0.82[ASN][1000 genomes]
rs12780267	0.84[ASN][1000 genomes]
rs1321962	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1853169	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1853176	0.85[ASN][1000 genomes]
rs1938418	0.81[ASN][1000 genomes]
rs2057360	0.84[ASN][1000 genomes]
rs2384716	0.92[ASN][1000 genomes]
rs2384717	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28472941	0.86[ASN][1000 genomes]
rs2891583	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34043057	0.86[ASN][1000 genomes]
rs34363046	0.84[ASN][1000 genomes]
rs34888293	0.85[ASN][1000 genomes]
rs35003233	0.92[ASN][1000 genomes]
rs35252146	0.86[ASN][1000 genomes]
rs35328530	0.82[ASN][1000 genomes]
rs35540073	0.85[ASN][1000 genomes]
rs4934859	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4934860	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4934865	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61857720	0.86[ASN][1000 genomes]
rs61857724	0.86[ASN][1000 genomes]
rs7071291	0.86[ASN][1000 genomes]
rs71489144	0.84[ASN][1000 genomes]
rs7897500	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7898973	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7908879	0.86[ASN][1000 genomes]
rs7909007	0.85[ASN][1000 genomes]
rs7915677	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7915791	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7921559	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895030	chr10:37715737-38674609	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv1045684	chr10:37765361-38426204	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	nsv540564	chr10:37765361-38426204	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	nsv8617	chr10:37815801-37877331	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv437664	chr10:37816510-37840199	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv437665	chr10:37816510-37840199	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv1813461	chr10:37816684-37860065	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv1806900	chr10:37817882-37826492	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv1807404	chr10:37817882-37826492	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv1809925	chr10:37817882-37826492	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv1814661	chr10:37817882-37826492	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
12	esv3693052	chr10:37818201-37834376	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:37824000-37826200	Enhancers	HSMM	muscle
2	chr10:37824200-37825600	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr10:37824200-37825600	Enhancers	Muscle Satellite Cultured Cells	--
4	chr10:37824400-37826200	Enhancers	HSMMtube	muscle
5	chr10:37824600-37826000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr10:37825400-37825600	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr10:37825400-37825600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell

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