Variant report

Variant	rs11011186
Chromosome Location	chr10:37736944-37736945
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10827786	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10827792	0.86[ASN][1000 genomes]
rs10827797	0.81[ASN][1000 genomes]
rs11011098	0.92[GIH][hapmap];0.85[MEX][hapmap]
rs11011101	0.92[GIH][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap]
rs11011176	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11011180	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11011192	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11011195	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11011201	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11011212	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11011223	1.00[CEU][hapmap]
rs11011246	0.86[ASN][1000 genomes]
rs11011247	0.86[ASN][1000 genomes]
rs11011249	0.86[ASN][1000 genomes]
rs11011250	0.81[ASN][1000 genomes]
rs11596929	0.81[ASN][1000 genomes]
rs11597247	0.86[ASN][1000 genomes]
rs11817898	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12354976	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12356232	0.89[ASW][hapmap];0.92[GIH][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap]
rs12357232	0.86[ASN][1000 genomes]
rs12765075	0.86[ASN][1000 genomes]
rs12772435	0.86[ASN][1000 genomes]
rs12776379	0.93[ASN][1000 genomes]
rs12778104	0.92[GIH][hapmap];0.85[MEX][hapmap]
rs12780267	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1321962	0.86[ASN][1000 genomes]
rs1853169	0.86[ASN][1000 genomes]
rs1853170	0.86[ASN][1000 genomes]
rs1853176	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1926129	0.81[LWK][hapmap]
rs1938418	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2057360	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2148272	1.00[ASW][hapmap];1.00[GIH][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap]
rs2384716	0.81[ASN][1000 genomes]
rs2384717	0.81[ASN][1000 genomes]
rs28472941	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2891583	0.86[ASN][1000 genomes]
rs34043057	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34363046	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34888293	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35003233	0.81[ASN][1000 genomes]
rs35252146	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35328530	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35540073	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4934859	0.86[ASN][1000 genomes]
rs4934860	0.86[ASN][1000 genomes]
rs4934865	0.86[ASN][1000 genomes]
rs61857720	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61857724	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7071291	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7097277	0.92[GIH][hapmap];1.00[MEX][hapmap]
rs71489144	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7897500	0.86[ASN][1000 genomes]
rs7898973	0.86[ASN][1000 genomes]
rs7908879	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7909007	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7915677	0.86[ASN][1000 genomes]
rs7915791	0.86[ASN][1000 genomes]
rs7921559	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv975007	chr10:37677218-37743945	ZNF genes & repeats Enhancers Weak transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv895030	chr10:37715737-38674609	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
3	nsv975035	chr10:37730013-37786245	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:37735600-37737600	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr10:37736600-37737800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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