Variant report

Variant	rs1926129
Chromosome Location	chr10:37579570-37579571
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:37579541..37581637-chr10:37590281..37592678,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000252621	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10827767	0.85[AFR][1000 genomes]
rs10827768	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs10827769	0.82[AFR][1000 genomes]
rs10827773	0.81[YRI][hapmap]
rs11011098	0.87[ASW][hapmap];0.84[LWK][hapmap];0.91[MKK][hapmap];0.89[YRI][hapmap];0.85[AFR][1000 genomes]
rs11011099	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs11011101	1.00[ASW][hapmap];0.94[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs11011102	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs11011103	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs11011105	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs11011106	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs11011107	1.00[YRI][hapmap]
rs11011108	1.00[YRI][hapmap]
rs1200865	0.91[YRI][hapmap]
rs12356232	0.87[ASW][hapmap];0.92[LWK][hapmap];0.90[MKK][hapmap];1.00[YRI][hapmap]
rs12766568	0.81[YRI][hapmap]
rs12778083	0.86[AFR][1000 genomes]
rs12778104	0.87[ASW][hapmap];0.86[LWK][hapmap];0.95[MKK][hapmap];0.91[YRI][hapmap];0.86[AFR][1000 genomes]
rs1926130	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1926133	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1926134	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2148272	0.86[LWK][hapmap];0.81[MKK][hapmap];0.81[YRI][hapmap]
rs34239465	0.89[AFR][1000 genomes]
rs34572770	0.87[AFR][1000 genomes]
rs35027552	0.87[AFR][1000 genomes]
rs35999186	0.85[AFR][1000 genomes]
rs61859281	0.81[AFR][1000 genomes]
rs61859309	0.88[AFR][1000 genomes]
rs6482029	0.86[AFR][1000 genomes]
rs7069858	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs7082383	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7093136	0.91[AFR][1000 genomes]
rs7093790	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs7095993	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7096155	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7096261	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7096361	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7097277	1.00[ASW][hapmap];0.81[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs71489135	0.81[AFR][1000 genomes]
rs7894974	0.81[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758213	chr10:37285763-37625699	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	esv2759742	chr10:37285763-37625699	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv947605	chr10:37432194-37615294	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1045454	chr10:37512369-37678936	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	esv2750892	chr10:37525594-37733381	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:37578000-37580200	Enhancers	A549	lung

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