Variant report
| Variant | rs1926130 |
|---|---|
| Chromosome Location | chr10:37583142-37583143 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs10827767 | 0.87[AFR][1000 genomes] |
| rs10827768 | 0.87[AFR][1000 genomes] |
| rs10827769 | 0.85[AFR][1000 genomes] |
| rs11011098 | 0.88[AFR][1000 genomes] |
| rs11011099 | 0.92[AFR][1000 genomes] |
| rs11011101 | 0.95[AFR][1000 genomes] |
| rs11011102 | 0.95[AFR][1000 genomes] |
| rs11011103 | 0.95[AFR][1000 genomes] |
| rs11011105 | 0.91[AFR][1000 genomes] |
| rs11011106 | 0.90[AFR][1000 genomes] |
| rs12778083 | 0.89[AFR][1000 genomes] |
| rs12778104 | 0.89[AFR][1000 genomes] |
| rs1926129 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34239465 | 0.91[AFR][1000 genomes] |
| rs34572770 | 0.90[AFR][1000 genomes] |
| rs35027552 | 0.90[AFR][1000 genomes] |
| rs35999186 | 0.87[AFR][1000 genomes] |
| rs61859281 | 0.83[AFR][1000 genomes] |
| rs61859309 | 0.90[AFR][1000 genomes] |
| rs6482029 | 0.89[AFR][1000 genomes] |
| rs7069858 | 0.89[AFR][1000 genomes] |
| rs7082383 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7093136 | 0.93[AFR][1000 genomes] |
| rs7093790 | 0.95[AFR][1000 genomes] |
| rs7095993 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs7096155 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7096261 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7096361 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7097277 | 0.87[AFR][1000 genomes] |
| rs71489135 | 0.81[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2758213 | chr10:37285763-37625699 | Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
| 2 | esv2759742 | chr10:37285763-37625699 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
| 3 | nsv947605 | chr10:37432194-37615294 | ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription | TF binding regionChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 4 | nsv1045454 | chr10:37512369-37678936 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| 5 | esv2750892 | chr10:37525594-37733381 | Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:37582400-37585400 | ZNF genes & repeats | HUES48 Cell Line | embryonic stem cell |
