Variant report

Variant	rs12778104
Chromosome Location	chr10:37592001-37592002
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:37590754..37593575-chr10:37595057..37598517,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000235687	Chromatin interaction

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs10827764	0.82[EUR][1000 genomes]
rs10827766	1.00[CEU][hapmap]
rs10827767	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10827768	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.86[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10827769	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10827770	1.00[CEU][hapmap]
rs10827773	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11011091	0.82[EUR][1000 genomes]
rs11011098	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11011099	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11011101	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];0.85[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11011102	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11011103	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11011105	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11011106	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11011107	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap]
rs11011108	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap]
rs11011113	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11011114	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11011135	1.00[CEU][hapmap]
rs11011137	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs11814667	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1200865	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs12355499	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12356232	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.85[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap]
rs12357165	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12359966	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12765283	1.00[CEU][hapmap]
rs12766568	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12778083	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12783534	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1926123	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1926124	0.80[EUR][1000 genomes]
rs1926129	0.87[ASW][hapmap];0.86[LWK][hapmap];0.95[MKK][hapmap];0.91[YRI][hapmap];0.86[AFR][1000 genomes]
rs1926130	0.89[AFR][1000 genomes]
rs1926133	0.91[YRI][hapmap]
rs1926134	0.91[YRI][hapmap]
rs2148272	1.00[CEU][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];0.85[MEX][hapmap];0.83[TSI][hapmap];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2296591	0.80[EUR][1000 genomes]
rs2296592	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2296593	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34042320	1.00[CEU][hapmap]
rs34239465	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34569813	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34572770	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35027552	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35359976	0.82[EUR][1000 genomes]
rs35706720	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35999186	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4450125	0.80[EUR][1000 genomes]
rs61859281	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61859309	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61859336	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61859337	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61859341	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61859343	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61865197	0.82[EUR][1000 genomes]
rs6482029	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6482032	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7069858	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7070285	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7071495	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7082383	0.91[YRI][hapmap];0.89[AFR][1000 genomes]
rs7093136	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7093790	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7095993	0.89[AFR][1000 genomes]
rs7096155	0.89[AFR][1000 genomes]
rs7096261	0.89[AFR][1000 genomes]
rs7096361	0.89[AFR][1000 genomes]
rs7097277	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs71489135	0.81[AFR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7894974	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs7909101	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758213	chr10:37285763-37625699	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	esv2759742	chr10:37285763-37625699	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv947605	chr10:37432194-37615294	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1045454	chr10:37512369-37678936	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	esv2750892	chr10:37525594-37733381	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:37592000-37592400	Enhancers	Breast Myoepithelial Primary Cells	Breast

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