Variant report

Variant	rs2296591
Chromosome Location	chr10:37603147-37603148
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA2	chr10:37603096-37603587	A549	lung:	n/a	n/a

Variant related genes	Relation type
LINC00993	TF binding region

Extended variants
information (count: 84 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs10827760	0.91[AMR][1000 genomes]
rs10827764	0.97[EUR][1000 genomes]
rs10827766	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10827767	0.80[EUR][1000 genomes]
rs10827768	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs10827769	0.80[EUR][1000 genomes]
rs10827770	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10827773	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs11011034	0.91[AMR][1000 genomes]
rs11011066	0.82[EUR][1000 genomes]
rs11011071	0.82[EUR][1000 genomes]
rs11011080	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11011081	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11011091	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11011098	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs11011099	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs11011101	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs11011102	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs11011103	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs11011105	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs11011106	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs11011107	1.00[CEU][hapmap]
rs11011108	1.00[CEU][hapmap]
rs11011113	0.85[EUR][1000 genomes]
rs11011114	0.85[EUR][1000 genomes]
rs11011135	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11011137	1.00[CEU][hapmap]
rs11814667	0.85[EUR][1000 genomes]
rs12355499	0.85[EUR][1000 genomes]
rs12355633	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12356232	1.00[CEU][hapmap]
rs12357165	0.86[EUR][1000 genomes]
rs12358280	0.82[EUR][1000 genomes]
rs12359966	0.85[EUR][1000 genomes]
rs12360325	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12765283	1.00[CEU][hapmap]
rs12766568	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes]
rs12778083	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs12778104	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs12783534	0.85[EUR][1000 genomes]
rs1926123	0.85[EUR][1000 genomes]
rs1926124	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2148272	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs2296592	0.85[EUR][1000 genomes]
rs2296593	0.85[EUR][1000 genomes]
rs34042320	1.00[CEU][hapmap]
rs34191815	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34239465	0.80[EUR][1000 genomes]
rs34454244	0.91[AMR][1000 genomes]
rs34569813	0.89[EUR][1000 genomes]
rs34572770	0.80[EUR][1000 genomes]
rs35027552	0.80[EUR][1000 genomes]
rs35359976	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35706720	0.85[EUR][1000 genomes]
rs35999186	0.80[EUR][1000 genomes]
rs4450125	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61859281	0.84[EUR][1000 genomes]
rs61859309	0.80[EUR][1000 genomes]
rs61859336	0.85[EUR][1000 genomes]
rs61859337	0.85[EUR][1000 genomes]
rs61859341	0.85[EUR][1000 genomes]
rs61859343	0.83[EUR][1000 genomes]
rs61865173	0.82[EUR][1000 genomes]
rs61865175	0.82[EUR][1000 genomes]
rs61865197	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61866705	0.91[AMR][1000 genomes]
rs61866717	0.91[AMR][1000 genomes]
rs6482029	0.80[EUR][1000 genomes]
rs6482032	0.89[EUR][1000 genomes]
rs7069858	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs7070285	0.83[EUR][1000 genomes]
rs7071495	0.81[EUR][1000 genomes]
rs7093136	0.80[EUR][1000 genomes]
rs7093790	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs7097277	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs71489135	0.81[EUR][1000 genomes]
rs7894974	1.00[CEU][hapmap]
rs7897685	0.82[EUR][1000 genomes]
rs7909101	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758213	chr10:37285763-37625699	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	esv2759742	chr10:37285763-37625699	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv947605	chr10:37432194-37615294	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1045454	chr10:37512369-37678936	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	esv2750892	chr10:37525594-37733381	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:37602800-37603200	Enhancers	Pancreas	Pancrea
2	chr10:37602800-37604600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr10:37603000-37604600	Enhancers	A549	lung

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