Variant report

Variant	rs61866717
Chromosome Location	chr10:37414679-37414680
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10827760	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11011034	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11011049	0.89[ASN][1000 genomes]
rs11011055	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11011066	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11011071	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12355633	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12358280	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12360325	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12765283	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12769604	0.80[AMR][1000 genomes]
rs12775886	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2296591	0.91[AMR][1000 genomes]
rs34191815	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34454244	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35359976	0.91[AMR][1000 genomes]
rs4450125	0.91[AMR][1000 genomes]
rs61865173	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61865175	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61866705	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs61866716	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7897685	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758213	chr10:37285763-37625699	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	esv2759742	chr10:37285763-37625699	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv831832	chr10:37366131-37563758	Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv1817816	chr10:37399856-37484107	Bivalent/Poised TSS Weak transcription Bivalent Enhancer Active TSS Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	esv1800211	chr10:37401669-37484107	Enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv1813707	chr10:37401669-37484107	Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Weak transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv895028	chr10:37412799-37446780	Bivalent/Poised TSS Enhancers Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	esv3360968	chr10:37413171-37415719	ZNF genes & repeats	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:37413400-37414800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell

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