Variant report

Variant	rs12775886
Chromosome Location	chr10:37391329-37391330
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10827760	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10827764	0.93[AMR][1000 genomes]
rs11011034	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11011049	0.89[ASN][1000 genomes]
rs11011055	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11011066	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11011071	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11011080	1.00[AMR][1000 genomes]
rs11011081	1.00[AMR][1000 genomes]
rs11011091	0.93[AMR][1000 genomes]
rs12355633	0.89[ASN][1000 genomes]
rs12358280	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12360325	0.89[ASN][1000 genomes]
rs12765283	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12766884	0.93[AMR][1000 genomes]
rs34042320	1.00[CHB][hapmap]
rs34191815	0.89[ASN][1000 genomes]
rs34454244	0.83[EUR][1000 genomes]
rs61865173	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs61865175	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs61865197	1.00[AMR][1000 genomes]
rs61866705	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61866716	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61866717	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7897685	0.93[AMR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036571	chr10:37172804-37396508	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv2758213	chr10:37285763-37625699	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	esv2759742	chr10:37285763-37625699	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv1054192	chr10:37298828-37396508	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv6398	chr10:37363206-37394313	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
6	nsv831832	chr10:37366131-37563758	Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv947845	chr10:37386444-37411634	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:37390000-37391400	Enhancers	A549	lung

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