Variant report

Variant	rs11011080
Chromosome Location	chr10:37550853-37550854
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10827764	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10827766	0.88[CEU][hapmap];1.00[JPT][hapmap]
rs10827768	0.90[CEU][hapmap]
rs10827770	0.90[CEU][hapmap];1.00[JPT][hapmap]
rs10827773	0.90[CEU][hapmap]
rs11011055	0.93[AMR][1000 genomes]
rs11011066	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11011071	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11011081	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11011091	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11011098	1.00[CEU][hapmap]
rs11011099	0.90[CEU][hapmap]
rs11011101	1.00[CEU][hapmap]
rs11011102	0.90[CEU][hapmap]
rs11011103	0.90[CEU][hapmap]
rs11011105	0.90[CEU][hapmap]
rs11011106	0.90[CEU][hapmap]
rs11011107	0.90[CEU][hapmap]
rs11011108	0.90[CEU][hapmap]
rs11011135	0.90[CEU][hapmap];1.00[JPT][hapmap]
rs11011137	0.90[CEU][hapmap]
rs12355633	0.87[EUR][1000 genomes]
rs12356232	1.00[CEU][hapmap]
rs12358280	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12360325	0.87[EUR][1000 genomes]
rs12765283	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs12766568	0.86[CEU][hapmap]
rs12766884	0.93[AMR][1000 genomes]
rs12775886	1.00[AMR][1000 genomes]
rs12778083	0.90[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12778104	1.00[CEU][hapmap]
rs1926124	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2148272	1.00[CEU][hapmap]
rs2296591	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34042320	1.00[CEU][hapmap]
rs34191815	0.87[EUR][1000 genomes]
rs35359976	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4450125	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61865173	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61865175	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61865197	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61866716	1.00[AMR][1000 genomes]
rs7069858	0.90[CEU][hapmap]
rs7093790	0.90[CEU][hapmap]
rs7097277	1.00[CEU][hapmap]
rs7894974	0.90[CEU][hapmap]
rs7897685	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758213	chr10:37285763-37625699	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	esv2759742	chr10:37285763-37625699	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv831832	chr10:37366131-37563758	Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv947605	chr10:37432194-37615294	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv1045454	chr10:37512369-37678936	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	esv2750892	chr10:37525594-37733381	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv982847	chr10:37549675-37560381	Flanking Active TSS Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:37550800-37551000	Flanking Active TSS	A549	lung
2	chr10:37550800-37551400	Enhancers	Rectal Smooth Muscle	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links