Variant report

Variant	rs34042320
Chromosome Location	chr10:37421199-37421200
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10827760	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10827766	1.00[CEU][hapmap]
rs10827768	1.00[CEU][hapmap]
rs10827770	1.00[CEU][hapmap]
rs11011034	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11011049	1.00[ASN][1000 genomes]
rs11011055	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11011066	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11011071	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11011077	1.00[CHB][hapmap]
rs11011098	1.00[CEU][hapmap]
rs11011099	1.00[CEU][hapmap]
rs11011101	1.00[CEU][hapmap]
rs11011102	1.00[CEU][hapmap]
rs11011103	1.00[CEU][hapmap]
rs11011105	1.00[CEU][hapmap]
rs11011106	1.00[CEU][hapmap]
rs11011107	1.00[CEU][hapmap]
rs11011108	1.00[CEU][hapmap]
rs12221253	1.00[LWK][hapmap]
rs12355633	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12356232	1.00[CEU][hapmap]
rs12358280	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12360325	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12411362	1.00[LWK][hapmap]
rs12765283	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12769604	0.80[AMR][1000 genomes]
rs12775886	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12778083	1.00[CEU][hapmap]
rs12778104	1.00[CEU][hapmap]
rs2296591	0.91[AMR][1000 genomes]
rs34191815	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34454244	1.00[AMR][1000 genomes]
rs35359976	0.91[AMR][1000 genomes]
rs4450125	0.91[AMR][1000 genomes]
rs61865173	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61865175	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61866705	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs61866716	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61866717	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7069858	1.00[CEU][hapmap]
rs7093790	1.00[CEU][hapmap]
rs7097277	1.00[CEU][hapmap]
rs7897685	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758213	chr10:37285763-37625699	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	esv2759742	chr10:37285763-37625699	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv831832	chr10:37366131-37563758	Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv1817816	chr10:37399856-37484107	Bivalent/Poised TSS Weak transcription Bivalent Enhancer Active TSS Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	esv1800211	chr10:37401669-37484107	Enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv1813707	chr10:37401669-37484107	Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Weak transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv895028	chr10:37412799-37446780	Bivalent/Poised TSS Enhancers Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv947846	chr10:37416318-37425320	Active TSS Enhancers	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
9	esv1804065	chr10:37416376-37526817	Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
10	esv1850268	chr10:37416550-37507493	Bivalent Enhancer Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	esv1797715	chr10:37418099-37468407	Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
12	esv1796271	chr10:37419090-37468407	Weak transcription Bivalent Enhancer Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
13	esv1813976	chr10:37419831-37511683	ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Bivalent/Poised TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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