Variant report

Variant	rs11011077
Chromosome Location	chr10:37528099-37528100
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10827760	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10827764	0.84[EUR][1000 genomes]
rs11011034	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11011049	1.00[ASN][1000 genomes]
rs11011055	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11011066	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11011071	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11011080	0.87[EUR][1000 genomes]
rs11011081	0.90[EUR][1000 genomes]
rs11011091	0.84[EUR][1000 genomes]
rs11011179	0.80[AMR][1000 genomes]
rs12355633	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12358280	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12360325	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12765283	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12769604	0.80[AMR][1000 genomes]
rs12775886	0.89[ASN][1000 genomes]
rs1926124	0.82[EUR][1000 genomes]
rs2296591	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34042320	1.00[CHB][hapmap]
rs34191815	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34454244	1.00[AMR][1000 genomes]
rs35359976	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4450125	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61865173	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61865175	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61865197	0.84[EUR][1000 genomes]
rs61866705	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs61866716	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61866717	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7897685	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758213	chr10:37285763-37625699	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	esv2759742	chr10:37285763-37625699	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv831832	chr10:37366131-37563758	Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv947605	chr10:37432194-37615294	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv1045454	chr10:37512369-37678936	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	esv2750892	chr10:37525594-37733381	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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