Variant report

Variant	rs12769604
Chromosome Location	chr10:37316573-37316574
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10827760	0.80[AMR][1000 genomes]
rs11010978	1.00[AFR][1000 genomes]
rs11010980	1.00[AFR][1000 genomes]
rs11011034	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12355633	0.80[AMR][1000 genomes]
rs12360325	0.80[AMR][1000 genomes]
rs12761676	1.00[AFR][1000 genomes]
rs12765283	1.00[JPT][hapmap]
rs12785183	1.00[AFR][1000 genomes]
rs17642955	1.00[AFR][1000 genomes]
rs34191815	0.80[AMR][1000 genomes]
rs34454244	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61866705	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61866717	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036571	chr10:37172804-37396508	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1052867	chr10:37196806-37323802	Weak transcription Enhancers Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1046197	chr10:37200503-37333823	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv895026	chr10:37239565-37322028	Enhancers ZNF genes & repeats Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1041146	chr10:37274522-37388857	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	esv2758213	chr10:37285763-37625699	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
7	esv2759742	chr10:37285763-37625699	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
8	nsv1054192	chr10:37298828-37396508	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:37315600-37316800	Enhancers	Colon Smooth Muscle	Colon
2	chr10:37316200-37316800	Enhancers	Breast Myoepithelial Primary Cells	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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