Variant report

Variant	rs12355633
Chromosome Location	chr10:37482795-37482796
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 118 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10827760	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10827764	0.84[EUR][1000 genomes]
rs10827766	1.00[CEU][hapmap]
rs10827768	1.00[CEU][hapmap]
rs10827770	1.00[CEU][hapmap]
rs10827773	1.00[CEU][hapmap]
rs11011034	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11011049	1.00[ASN][1000 genomes]
rs11011055	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11011066	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11011071	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11011077	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11011080	0.87[EUR][1000 genomes]
rs11011081	0.90[EUR][1000 genomes]
rs11011091	0.84[EUR][1000 genomes]
rs11011098	1.00[CEU][hapmap]
rs11011099	1.00[CEU][hapmap]
rs11011101	1.00[CEU][hapmap]
rs11011102	1.00[CEU][hapmap]
rs11011103	1.00[CEU][hapmap]
rs11011105	1.00[CEU][hapmap]
rs11011106	1.00[CEU][hapmap]
rs11011107	1.00[CEU][hapmap]
rs11011108	1.00[CEU][hapmap]
rs11011135	1.00[CEU][hapmap]
rs11011137	1.00[CEU][hapmap]
rs11011170	1.00[AFR][1000 genomes]
rs12356232	1.00[CEU][hapmap]
rs12358280	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12360325	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12765283	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12766568	1.00[CEU][hapmap]
rs12769604	0.80[AMR][1000 genomes]
rs12775886	0.89[ASN][1000 genomes]
rs12778083	1.00[CEU][hapmap]
rs12778104	1.00[CEU][hapmap]
rs1926124	0.82[EUR][1000 genomes]
rs2148272	1.00[CEU][hapmap]
rs2296591	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34042320	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs34191815	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34454244	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35359976	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4450125	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61865173	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61865175	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61865197	0.84[EUR][1000 genomes]
rs61866705	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs61866716	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61866717	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7069858	1.00[CEU][hapmap]
rs7093790	1.00[CEU][hapmap]
rs7097277	1.00[CEU][hapmap]
rs7894974	1.00[CEU][hapmap]
rs7897685	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:63 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758213	chr10:37285763-37625699	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	esv2759742	chr10:37285763-37625699	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv831832	chr10:37366131-37563758	Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv1817816	chr10:37399856-37484107	Bivalent/Poised TSS Weak transcription Bivalent Enhancer Active TSS Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	esv1800211	chr10:37401669-37484107	Enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv1813707	chr10:37401669-37484107	Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Weak transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	esv1804065	chr10:37416376-37526817	Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
8	esv1850268	chr10:37416550-37507493	Bivalent Enhancer Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	esv1813976	chr10:37419831-37511683	ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Bivalent/Poised TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv895029	chr10:37423197-37497698	Weak transcription Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	esv1823169	chr10:37425627-37491080	Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Weak transcription Strong transcription Bivalent/Poised TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	esv1826074	chr10:37430785-37507693	Weak transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	esv1805908	chr10:37430985-37507493	Active TSS Enhancers Strong transcription Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	esv1828844	chr10:37430985-37507493	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
15	esv1850059	chr10:37430985-37507493	Enhancers Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
16	nsv947605	chr10:37432194-37615294	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
17	esv1805228	chr10:37436096-37487848	Bivalent/Poised TSS Weak transcription Enhancers Active TSS ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases
18	esv1795675	chr10:37436096-37494701	Active TSS Enhancers ZNF genes & repeats Weak transcription Strong transcription Bivalent/Poised TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
19	esv1812394	chr10:37437123-37491280	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases
20	esv1826090	chr10:37437123-37491280	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases
21	esv1848896	chr10:37437123-37491280	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
22	nsv825347	chr10:37437315-37495897	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases
23	esv1804142	chr10:37437323-37487371	Weak transcription ZNF genes & repeats Enhancers Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
24	esv1792226	chr10:37437323-37491080	Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription	TF binding region	1 gene(s)	inside rSNPs	diseases
25	esv1807318	chr10:37437323-37491080	Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases
26	esv1831405	chr10:37437323-37491080	Active TSS ZNF genes & repeats Enhancers Weak transcription Strong transcription	TF binding region	1 gene(s)	inside rSNPs	diseases
27	esv20564	chr10:37437653-37495421	Weak transcription Active TSS Enhancers ZNF genes & repeats Strong transcription	TF binding region	1 gene(s)	inside rSNPs	diseases
28	esv1823665	chr10:37438265-37489403	Weak transcription Enhancers ZNF genes & repeats Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
29	esv1802107	chr10:37438701-37485951	Weak transcription ZNF genes & repeats Enhancers Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
30	esv1828977	chr10:37438701-37485951	Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
31	esv1815071	chr10:37438701-37487848	Weak transcription Enhancers Active TSS ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases
32	esv1795711	chr10:37439332-37486964	ZNF genes & repeats Active TSS Enhancers Weak transcription	TF binding region	1 gene(s)	inside rSNPs	diseases
33	esv1820238	chr10:37439532-37486764	Weak transcription Enhancers ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases
34	esv1829407	chr10:37440522-37486964	Weak transcription Enhancers ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases
35	esv1811017	chr10:37440722-37486764	Weak transcription Enhancers ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases
36	esv1827964	chr10:37440722-37486764	Weak transcription ZNF genes & repeats Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
37	esv1798175	chr10:37441337-37486964	Weak transcription Enhancers ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases
38	esv1808933	chr10:37441337-37486964	Enhancers Weak transcription ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases
39	esv1819570	chr10:37441337-37486964	ZNF genes & repeats Weak transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
40	esv1845802	chr10:37441537-37486764	ZNF genes & repeats Enhancers Weak transcription	TF binding region	1 gene(s)	inside rSNPs	diseases
41	esv1823342	chr10:37441703-37488233	ZNF genes & repeats Enhancers Weak transcription	TF binding region	1 gene(s)	inside rSNPs	diseases
42	nsv8616	chr10:37442737-37490027	Weak transcription Enhancers ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases
43	esv1816955	chr10:37443038-37494701	Strong transcription Weak transcription ZNF genes & repeats Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
44	esv1848695	chr10:37445425-37490697	Weak transcription ZNF genes & repeats Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
45	esv15813	chr10:37446621-37483186	Weak transcription ZNF genes & repeats Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
46	esv1797937	chr10:37447050-37486764	Weak transcription ZNF genes & repeats Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
47	esv1804988	chr10:37449475-37502185	Strong transcription Weak transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
48	esv1797832	chr10:37450455-37484107	Weak transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
49	esv1827160	chr10:37450455-37484107	Enhancers Weak transcription	TF binding region	1 gene(s)	inside rSNPs	diseases
50	esv1843950	chr10:37450455-37484107	Weak transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:37479600-37490800	Weak transcription	A549	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links