Variant report
Variant | rs12776379 |
---|---|
Chromosome Location | chr10:37810422-37810423 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10827786 | 0.94[ASN][1000 genomes] |
rs10827792 | 0.82[ASN][1000 genomes] |
rs11011176 | 0.88[ASN][1000 genomes] |
rs11011180 | 0.88[ASN][1000 genomes] |
rs11011186 | 0.93[ASN][1000 genomes] |
rs11011192 | 0.92[ASN][1000 genomes] |
rs11011195 | 0.90[ASN][1000 genomes] |
rs11011201 | 0.92[ASN][1000 genomes] |
rs11011212 | 0.96[ASN][1000 genomes] |
rs11011219 | 0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes] |
rs11011246 | 0.82[ASN][1000 genomes] |
rs11011247 | 0.82[ASN][1000 genomes] |
rs11011249 | 0.82[ASN][1000 genomes] |
rs11597247 | 0.82[ASN][1000 genomes] |
rs11817898 | 0.93[ASN][1000 genomes] |
rs12354976 | 0.94[ASN][1000 genomes] |
rs12357232 | 0.82[ASN][1000 genomes] |
rs12765075 | 0.82[ASN][1000 genomes] |
rs12772435 | 0.82[ASN][1000 genomes] |
rs12777805 | 0.90[AFR][1000 genomes] |
rs12780267 | 0.90[ASN][1000 genomes] |
rs1321962 | 0.82[ASN][1000 genomes] |
rs1853169 | 0.82[ASN][1000 genomes] |
rs1853170 | 0.82[ASN][1000 genomes] |
rs1853176 | 0.92[ASN][1000 genomes] |
rs1938418 | 0.88[ASN][1000 genomes] |
rs2057360 | 0.93[ASN][1000 genomes] |
rs28472941 | 0.96[ASN][1000 genomes] |
rs2891583 | 0.82[ASN][1000 genomes] |
rs34043057 | 0.93[ASN][1000 genomes] |
rs34363046 | 0.93[ASN][1000 genomes] |
rs34888293 | 0.92[ASN][1000 genomes] |
rs35252146 | 0.96[ASN][1000 genomes] |
rs35328530 | 0.89[ASN][1000 genomes] |
rs35540073 | 0.92[ASN][1000 genomes] |
rs4934859 | 0.82[ASN][1000 genomes] |
rs4934860 | 0.82[ASN][1000 genomes] |
rs4934865 | 0.82[ASN][1000 genomes] |
rs61857720 | 0.93[ASN][1000 genomes] |
rs61857724 | 0.96[ASN][1000 genomes] |
rs7071291 | 0.96[ASN][1000 genomes] |
rs71489144 | 0.93[ASN][1000 genomes] |
rs71489150 | 0.92[AFR][1000 genomes] |
rs71489151 | 0.92[AFR][1000 genomes] |
rs7897500 | 0.82[ASN][1000 genomes] |
rs7898973 | 0.82[ASN][1000 genomes] |
rs7908879 | 0.96[ASN][1000 genomes] |
rs7909007 | 0.94[ASN][1000 genomes] |
rs7915677 | 0.82[ASN][1000 genomes] |
rs7915791 | 0.82[ASN][1000 genomes] |
rs7921559 | 0.96[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv895030 | chr10:37715737-38674609 | Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 53 gene(s) | inside rSNPs | diseases |
2 | nsv1045684 | chr10:37765361-38426204 | Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 44 gene(s) | inside rSNPs | diseases |
3 | nsv540564 | chr10:37765361-38426204 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 44 gene(s) | inside rSNPs | diseases |
4 | esv1807703 | chr10:37807847-37823398 | Enhancers ZNF genes & repeats | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
5 | esv1810701 | chr10:37808117-37823398 | ZNF genes & repeats Enhancers | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr10:37810200-37812400 | ZNF genes & repeats | HUES48 Cell Line | embryonic stem cell |