Variant report
| Variant | rs11011219 |
|---|---|
| Chromosome Location | chr10:37806133-37806134 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:31)
| rs_ID | r2[population] |
|---|---|
| rs10827783 | 0.97[ASN][1000 genomes] |
| rs10827784 | 0.97[ASN][1000 genomes] |
| rs11011135 | 1.00[CHB][hapmap] |
| rs11011170 | 0.97[ASN][1000 genomes] |
| rs11011171 | 0.97[ASN][1000 genomes] |
| rs11011178 | 0.97[ASN][1000 genomes] |
| rs11011181 | 0.97[ASN][1000 genomes] |
| rs11011183 | 0.97[ASN][1000 genomes] |
| rs11011189 | 0.97[ASN][1000 genomes] |
| rs11011190 | 0.97[ASN][1000 genomes] |
| rs11011194 | 0.97[ASN][1000 genomes] |
| rs11011223 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs11011248 | 0.90[ASN][1000 genomes] |
| rs12355363 | 0.97[ASN][1000 genomes] |
| rs12357796 | 0.97[ASN][1000 genomes] |
| rs12764583 | 0.97[ASN][1000 genomes] |
| rs12766568 | 1.00[CHB][hapmap] |
| rs12776379 | 0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs12778547 | 0.97[ASN][1000 genomes] |
| rs34893122 | 0.97[ASN][1000 genomes] |
| rs34930751 | 0.97[ASN][1000 genomes] |
| rs35007396 | 0.97[ASN][1000 genomes] |
| rs35196817 | 0.97[ASN][1000 genomes] |
| rs35620394 | 0.97[ASN][1000 genomes] |
| rs36036861 | 0.97[ASN][1000 genomes] |
| rs3739991 | 0.90[ASN][1000 genomes] |
| rs61857694 | 0.97[ASN][1000 genomes] |
| rs61857715 | 0.97[ASN][1000 genomes] |
| rs61857718 | 0.97[ASN][1000 genomes] |
| rs61857719 | 0.97[ASN][1000 genomes] |
| rs61857726 | 0.97[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv895030 | chr10:37715737-38674609 | Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 53 gene(s) | inside rSNPs | diseases |
| 2 | nsv1045684 | chr10:37765361-38426204 | Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 44 gene(s) | inside rSNPs | diseases |
| 3 | nsv540564 | chr10:37765361-38426204 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 44 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:37805800-37807000 | ZNF genes & repeats | HUES48 Cell Line | embryonic stem cell |
