Variant report

Variant	rs61857726
Chromosome Location	chr10:37783578-37783579
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:37779289..37781290-chr10:37781587..37784398,2	MCF-7	breast:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10827783	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10827784	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10827786	0.81[AFR][1000 genomes]
rs11011170	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11011171	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11011178	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11011179	0.86[EUR][1000 genomes]
rs11011181	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11011183	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11011189	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11011190	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11011194	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11011212	0.85[AFR][1000 genomes]
rs11011219	0.97[ASN][1000 genomes]
rs11011223	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11011248	0.87[ASN][1000 genomes]
rs11817898	0.84[AFR][1000 genomes]
rs12354976	0.95[AFR][1000 genomes]
rs12355363	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12357796	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12764583	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12778547	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1321965	0.81[AFR][1000 genomes]
rs2057360	0.82[AFR][1000 genomes]
rs28472941	0.84[AFR][1000 genomes]
rs28608853	0.88[EUR][1000 genomes]
rs34363046	0.86[AFR][1000 genomes]
rs34893122	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34930751	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35007396	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35196817	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35252146	0.84[AFR][1000 genomes]
rs35620394	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs36036861	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3739991	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs60190022	0.91[AFR][1000 genomes]
rs61857694	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61857715	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61857718	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61857719	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61857724	0.96[AFR][1000 genomes]
rs7071291	0.82[AFR][1000 genomes]
rs71489144	0.97[AFR][1000 genomes]
rs7908879	0.84[AFR][1000 genomes]
rs7921559	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895030	chr10:37715737-38674609	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv975035	chr10:37730013-37786245	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv1045684	chr10:37765361-38426204	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	nsv540564	chr10:37765361-38426204	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:37783400-37784200	Weak transcription	A549	lung

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